strum: STRUctural Modeling of Latent Variables for General Pedigree

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Implements a broad class of latent variable and structural equation models for general pedigree data.

Author
Nathan Morris [aut, cre], Yeunjoo Song [aut], Stephen Cahn [ctb]
Date of publication
2015-06-12 06:43:35
Maintainer
Nathan Morris <nathan.morris@cwru.edu>
License
GPL (>= 2)
Version
0.6.2

View on CRAN

Man pages

createSimModel
Create strumSimModel Object
createStrumData
Create strumData Object
createStrumMarker
Create strumMarker Object
createStrumModel
Create strumModel Object
importHapmapData
Import Hapmap Data
simulateStrumData
Simulate strumData Object
strum
STRUctural Modeling of Latent Variables for Family Data
strumData-class
Class '"strumData"'
strumFittedModel-class
Class '"strumFittedModel"'
strumIBD-class
Class '"strumIBD"'
strumMarker-class
Class '"strumMarker"'
strumModel-class
Class '"strumModel"'
strum-package
A Package for STRUctural Modeling of Latent Variables for...
strumSimModel-class
Class '"strumSimModel"'
strumVirtualModel-class
Class '"strumVirtualModel"'

Files in this package

strum
strum/inst
strum/inst/extdata
strum/inst/extdata/hap20snp10.Rdata
strum/inst/extdata/example_ped.csv
strum/inst/extdata/example_raw.csv
strum/inst/extdata/GENIBD.chr1Ped.ibd
strum/inst/doc
strum/inst/doc/strum-example.R
strum/inst/doc/strum-intro.R
strum/inst/doc/strum-intro.Rnw
strum/inst/doc/strum-example.Rnw
strum/inst/doc/strum-example.pdf
strum/inst/doc/strum-intro.pdf
strum/inst/include
strum/inst/include/utils.h
strum/src
strum/src/Makevars
strum/src/computeInterval.cpp
strum/src/computeLLDeriv.cpp
strum/src/computeQ.cpp
strum/src/Makevars.win
strum/NAMESPACE
strum/R
strum/R/strum.R
strum/R/06strumData.R
strum/R/utils.R
strum/R/estimateCovariance.R
strum/R/02strumModel.R
strum/R/03strumFittedModel.R
strum/R/estimateDerivative.R
strum/R/01strumSimModel.R
strum/R/fitModel.R
strum/R/estimateParameter.R
strum/R/05strumIBD.R
strum/R/createModel.R
strum/R/simulateData.R
strum/R/00strumVirtualModel.R
strum/R/generateStartValue.R
strum/R/04strumMarker.R
strum/R/createMarker.R
strum/R/createData.R
strum/vignettes
strum/vignettes/figures
strum/vignettes/figures/fig_linkage.png
strum/vignettes/figures/fig_model7.png
strum/vignettes/figures/fig_association.png
strum/vignettes/figures/fig_model4.png
strum/vignettes/figures/fig_model8.png
strum/vignettes/figures/fig_model1.png
strum/vignettes/figures/fig_model9.png
strum/vignettes/figures/fig_model0.png
strum/vignettes/figures/fig_model3.png
strum/vignettes/figures/fig_model5.png
strum/vignettes/figures/fig_model6.png
strum/vignettes/figures/fig_model2.png
strum/vignettes/strum-intro.Rnw
strum/vignettes/strum-example.Rnw
strum/MD5
strum/build
strum/build/vignette.rds
strum/DESCRIPTION
strum/ChangeLog
strum/man
strum/man/strumVirtualModel-class.Rd
strum/man/simulateStrumData.Rd
strum/man/strumMarker-class.Rd
strum/man/createStrumData.Rd
strum/man/strum.Rd
strum/man/strumData-class.Rd
strum/man/importHapmapData.Rd
strum/man/strumModel-class.Rd
strum/man/createSimModel.Rd
strum/man/createStrumModel.Rd
strum/man/strum-package.Rd
strum/man/createStrumMarker.Rd
strum/man/strumFittedModel-class.Rd
strum/man/strumSimModel-class.Rd
strum/man/strumIBD-class.Rd