Description Usage Arguments Details Value See Also Examples
A function to create strumData object.
1 | createStrumData(inData, dType, ibdFileName=NULL, fileType="SAGE")
|
inData |
Object of class |
dType |
Character stating the type of input data, |
ibdFileName |
Character stating the name of ibd file to import. |
fileType |
Character stating the type of ibd file, the deafult value is "SAGE". |
This function is used to create a strumData class object for strum analysis.
The value of inData
has to be a data.frame. The allowed values for
dType
is either "Pedigree" or "RawData".
Note that, if dType="Pedigree", the data must be a data.frame with 4 required
fields - family, id, father, mother.
The ibd information for the family data can be imported by specifying the name
of ibd file into ibdFileName
. Currently, the ibd file generated by the
program GENIBD in S.A.G.E. package is supported.
Returns an object of class strumData
.
1 2 3 4 5 6 7 8 9 | ## Not run:
# Create a strumData object with different type of input data.
# - dF is a data.frame containing input data.
#-------------------------------------------------------------
rawStrumData = createStrumData(dF, "RawData")
pedStrumData = createStrumData(dF, "Pedigree")
pedStrumDataIBD = createStrumData(dF, "Pedigree", ibdFileName="ch20.ibd")
## End(Not run)
|
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