supclust: Supervised Clustering of Predictor Variables such as Genes
Version 1.0-7

Methodology for supervised grouping aka "clustering" of potentially many predictor variables, such as genes etc.

Browse man pages Browse package API and functions Browse package files

AuthorMarcel Dettling <marcel.dettling@zhaw.ch> and Martin Maechler
Date of publication2011-12-02 16:23:18
MaintainerMartin Maechler <maechler@stat.math.ethz.ch>
LicenseGPL-2
Version1.0-7
URL http://www.stat.math.ethz.ch/~dettling/
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("supclust")

Man pages

back.search: Internal functions for Supervised Grouping
coef.pelora: Extract the Model Coefficients of Pelora
dlda: Classification with Wilma's Clusters
fitted.pelora: Extract the Fitted Values of Pelora
fitted.wilma: Extract the Fitted Values of Wilma
leukemia: A part of the Golub's famous AML/ALL-leukemia dataset
margin: Classification Margin Between Two Sample Classes
pelora: Supervised Grouping of Predictor Variables
plot.pelora: 2-Dimensional Visualization of Pelora's Output
plot.wilma: 2-Dimensional Visualization of Wilma's Output
predict.pelora: Predict Method for Pelora
predict.wilma: Predict Method for Wilma
print.pelora: Print Method for Pelora Objects
print.wilma: Print Method for Wilma Objects
score: Wilcoxon Score for Binary Problems
sign.change: Sign-flipping of Predictor Variables to Obtain Equal Polarity
signflip: Sign-flipping of Predictor Variables to Obtain Equal Polarity
standardize.genes: Standardization of Predictor Variables
summary.pelora: Summary Method for Pelora Objects
summary.wilma: Summary Method for Wilma Objects
wilma: Supervised Clustering of Predictor Variables

Functions

aggtrees Man page Source code
back.search Man page Source code
coef.pelora Man page Source code
dlda Man page Source code
fitted.pelora Man page Source code
fitted.wilma Man page Source code
leukemia Man page
leukemia.x Man page
leukemia.y Man page
leukemia.z Man page
logreg Man page Source code
margin Man page Source code
nnr Man page Source code
p.1clust Man page Source code
p.1gen Source code
pelora Man page Source code
plot.pelora Man page Source code
plot.wilma Man page Source code
predict.pelora Man page Source code
predict.wilma Man page Source code
print.pelora Man page Source code
print.wilma Man page Source code
printClist Man page Source code
ridge.coef Man page Source code
score Man page Source code
sign.change Man page Source code
sign.flip Man page Source code
standardize.genes Man page Source code
summary.pelora Man page Source code
summary.wilma Man page Source code
wilma Man page Source code

Files

MD5
data
data/leukemia.rda
tests
tests/pelora-ex.Rout.save
tests/wilma-ex.Rout.save-64b
tests/pelora-ex.R
tests/wilma-ex.Rout.save-32b
tests/wilma-ex.Rout.save
tests/wilma-ex.R
DESCRIPTION
NAMESPACE
TODO
man
man/summary.wilma.Rd
man/print.pelora.Rd
man/wilma.Rd
man/signflip.Rd
man/score.Rd
man/summary.pelora.Rd
man/predict.pelora.Rd
man/sign.change.Rd
man/fitted.pelora.Rd
man/print.wilma.Rd
man/standardize.genes.Rd
man/dlda.Rd
man/fitted.wilma.Rd
man/pelora.Rd
man/margin.Rd
man/plot.pelora.Rd
man/coef.pelora.Rd
man/predict.wilma.Rd
man/leukemia.Rd
man/back.search.Rd
man/plot.wilma.Rd
R
R/pelora.R
R/zzz.R
R/pelora-utils.R
R/wilma.R
R/wilma-utils.R
ChangeLog
INDEX
src
src/Makevars
src/wilma.c
src/pelora.c
supclust documentation built on May 19, 2017, 7:01 a.m.