Phenotype data of GSE1992

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Description

Data such as patients' information, tumor characteristics, samples information related to GSE1992

Usage

1
data("gse1992pheno")

Format

A data frame with 124 observations on the following 24 variables.

GEO_array_names

a character vector

Array_Name

a character vector

Hu_et_al.._BMC_Genomics_7.96_.27Apr2006.

a character vector

intrinsic_pairs_from_Hu_et_al._2006._exact_RNA_replicates._or_cell_line_experiments

a character vector

Oh_et_al.._Journal_of_Clinical_Oncology._Apr_10._24.11..1656.64_.2006.

a character vector

Weigelt_et_al.._Cancer_Research._65.20..9155.8_.2005..

a character vector

Perreard_et_al.._Breast_Cancer_Research._Apr_20.8.2..R23_.2006.

a character vector

Herschkowitz_et_al.._Genome_Biol._2007_May_10.8.5..R76

a character vector

Mullins_et_al.._Clinical_Chemistry_.27._53.7..1273.9

a character vector

Hoadley_et_al.._BMC_Genomics_8.258_.2007.

a character vector

Age

a numeric vector

ER__.1.positive._0.negative.

a numeric vector

Node_status_.1.positive.1_or_more_nodes.._0.negative.

a numeric vector

Grade

a numeric vector

Size_.1._..2cm._2._.2cm_to_..5cm._3..5cm._4.any_size_with_direct_extension_to_chest_wall_or_skin.

a numeric vector

RFS_event_.0.no_relapse.1.relapsed_at_any_site_or_died_of_disease.

a numeric vector

RFS_months

a numeric vector

Overall_Survival_Event_.0.alive.1.DOD_or_DOC.

a numeric vector

Overall_suvival_months

a numeric vector

Singe_Sample_Predictor_Subtype_.S.SSP_Subtype_assigned_according_to_Hu_et_al._2005._except_for_claudin.low_samples_that_were_identified_by_clustering_analysis

a character vector

Hoadley_et_al._5.class_Subtype

a character vector

GEO_individual_microarray_Accession_number

a character vector

Target_Source_2_.Cy5.

a character vector

Target_source_1_.Cy3.

a character vector

Source

https://genome.unc.edu/pubsup/breastGEO/UNC-GEO-9-Papers-for-Website-12-23-2009.xls

References

Yasrebi H, Sperisen P, Praz V, Bucher P, 2009 Can Survival Prediction Be Improved By Merging Gene Expression Data Sets?. PLoS ONE 4(10): e7431. doi:10.1371/journal.pone.0007431.

See Also

gse1992

Examples

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