gse1992pheno: Phenotype data of GSE1992
In survJamda.data: Data for Package 'survJambda'
Description
Usage
Format
Source
References
See Also
Examples
Description
Data such as patients' information, tumor characteristics, samples information related to GSE1992
Usage
1
data("gse1992pheno")
Format
A data frame with 124 observations on the following 24 variables.
GEO_array_namesa character vector
Array_Namea character vector
Hu_et_al.._BMC_Genomics_7.96_.27Apr2006.a character vector
intrinsic_pairs_from_Hu_et_al._2006._exact_RNA_replicates._or_cell_line_experimentsa character vector
Oh_et_al.._Journal_of_Clinical_Oncology._Apr_10._24.11..1656.64_.2006.a character vector
Weigelt_et_al.._Cancer_Research._65.20..9155.8_.2005..a character vector
Perreard_et_al.._Breast_Cancer_Research._Apr_20.8.2..R23_.2006.a character vector
Herschkowitz_et_al.._Genome_Biol._2007_May_10.8.5..R76a character vector
Mullins_et_al.._Clinical_Chemistry_.27._53.7..1273.9a character vector
Hoadley_et_al.._BMC_Genomics_8.258_.2007.a character vector
Agea numeric vector
ER__.1.positive._0.negative.a numeric vector
Node_status_.1.positive.1_or_more_nodes.._0.negative.a numeric vector
Gradea numeric vector
Size_.1._..2cm._2._.2cm_to_..5cm._3..5cm._4.any_size_with_direct_extension_to_chest_wall_or_skin.a numeric vector
RFS_event_.0.no_relapse.1.relapsed_at_any_site_or_died_of_disease.a numeric vector
RFS_monthsa numeric vector
Overall_Survival_Event_.0.alive.1.DOD_or_DOC.a numeric vector
Overall_suvival_monthsa numeric vector
Singe_Sample_Predictor_Subtype_.S.SSP_Subtype_assigned_according_to_Hu_et_al._2005._except_for_claudin.low_samples_that_were_identified_by_clustering_analysisa character vector
Hoadley_et_al._5.class_Subtypea character vector
GEO_individual_microarray_Accession_numbera character vector
Target_Source_2_.Cy5.a character vector
Target_source_1_.Cy3.a character vector
Source
https://genome.unc.edu/pubsup/breastGEO/UNC-GEO-9-Papers-for-Website-12-23-2009.xls
References
Yasrebi H, Sperisen P, Praz V, Bucher P, 2009 Can Survival Prediction Be Improved By Merging Gene Expression Data Sets?. PLoS ONE 4(10): e7431. doi:10.1371/journal.pone.0007431.
See Also
Examples
1
survJamda.data documentation built on May 2, 2019, 2:13 p.m.
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Description Usage Format Source References See Also Examples
Description
Data such as patients' information, tumor characteristics, samples information related to GSE1992
Usage
1 | data("gse1992pheno")
|
Format
A data frame with 124 observations on the following 24 variables.
GEO_array_namesa character vector
Array_Namea character vector
Hu_et_al.._BMC_Genomics_7.96_.27Apr2006.a character vector
intrinsic_pairs_from_Hu_et_al._2006._exact_RNA_replicates._or_cell_line_experimentsa character vector
Oh_et_al.._Journal_of_Clinical_Oncology._Apr_10._24.11..1656.64_.2006.a character vector
Weigelt_et_al.._Cancer_Research._65.20..9155.8_.2005..a character vector
Perreard_et_al.._Breast_Cancer_Research._Apr_20.8.2..R23_.2006.a character vector
Herschkowitz_et_al.._Genome_Biol._2007_May_10.8.5..R76a character vector
Mullins_et_al.._Clinical_Chemistry_.27._53.7..1273.9a character vector
Hoadley_et_al.._BMC_Genomics_8.258_.2007.a character vector
Agea numeric vector
ER__.1.positive._0.negative.a numeric vector
Node_status_.1.positive.1_or_more_nodes.._0.negative.a numeric vector
Gradea numeric vector
Size_.1._..2cm._2._.2cm_to_..5cm._3..5cm._4.any_size_with_direct_extension_to_chest_wall_or_skin.a numeric vector
RFS_event_.0.no_relapse.1.relapsed_at_any_site_or_died_of_disease.a numeric vector
RFS_monthsa numeric vector
Overall_Survival_Event_.0.alive.1.DOD_or_DOC.a numeric vector
Overall_suvival_monthsa numeric vector
Singe_Sample_Predictor_Subtype_.S.SSP_Subtype_assigned_according_to_Hu_et_al._2005._except_for_claudin.low_samples_that_were_identified_by_clustering_analysisa character vector
Hoadley_et_al._5.class_Subtypea character vector
GEO_individual_microarray_Accession_numbera character vector
Target_Source_2_.Cy5.a character vector
Target_source_1_.Cy3.a character vector
Source
https://genome.unc.edu/pubsup/breastGEO/UNC-GEO-9-Papers-for-Website-12-23-2009.xls
References
Yasrebi H, Sperisen P, Praz V, Bucher P, 2009 Can Survival Prediction Be Improved By Merging Gene Expression Data Sets?. PLoS ONE 4(10): e7431. doi:10.1371/journal.pone.0007431.
See Also
Examples
1 |
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