surv_design_effect: Compute design effect over time

In survinger: Design-Adjusted Inference for Pathogen Lineage Surveillance

Compute design effect over time

Description

Compute design effect over time

Usage

surv_design_effect(weighted, naive)

Arguments

weighted	A surv_prevalence object.
naive	A surv_prevalence object.

Value

A tibble with time, deff, and bias_correction columns.

Examples

sim <- surv_simulate(n_regions = 3, n_weeks = 10, seed = 1)
d <- surv_design(sim$sequences, ~ region,
                 sim$population[c("region", "seq_rate")], sim$population)
w <- surv_lineage_prevalence(d, "BA.2.86")
n <- surv_naive_prevalence(d, "BA.2.86")
surv_design_effect(w, n)

survinger documentation built on April 27, 2026, 9:10 a.m.