API for taxadb
A High-Performance Taxonomic Database Interface

Global functions
`%||%` Source code
archival_notice Source code
archive_file Source code
as_prefix Source code
assert_deprecated Source code
assert_has_common Source code
available_providers Man page Source code
available_versions Man page Source code
bb Source code
binomial_names Source code
build_classification Source code
build_col Man page Source code
build_dir Man page Source code
build_fishbase Man page Source code
build_gbif Man page Source code
build_itis Man page Source code
build_ncbi Man page Source code
build_ott Man page Source code
canonical_name_sql Source code
check Source code
classify_sql Source code
clean_names Man page Source code
common_contains Man page Source code
common_starts_with Man page Source code
configure_duckdb Source code
count_where Source code
drop_parenthetical Source code
drop_punc Source code
drop_qualifier_sql Source code
drop_sp. Source code
duckdb_view Source code
duplicate_as_unresolved Source code
dwc_select Source code
ensure_httpfs Source code
epithet_sql Source code
extract_archive Source code
fetch_archive Source code
file_sha256 Source code
filter_by Man page Source code
filter_common Man page Source code
filter_id Man page Source code
filter_like Source code
filter_name Man page Source code
filter_rank Man page Source code
fuzzy_filter Man page Source code
get_ids Man page Source code
get_names Man page Source code
has_table Source code
i_or_na Source code
ibr Source code
id_prefix Source code
id_to_prefix Source code
is_test_provider Source code
latest_fishbase_version Source code
latest_version Man page Source code
license_spdx Source code
list_snapshots Man page Source code
list_snapshots_uncached Source code
name_contains Man page Source code
name_starts_with Man page Source code
no_snapshots Source code
normalized_src Source code
prefix_id Source code
prefix_to_uri Source code
provenance_for Source code
readme_lines Source code
record_source Source code
replace_empty Source code
replace_na Source code
rule_accepted_has_id Source code
rule_accepted_resolves Source code
rule_accepted_unique Source code
rule_columns Source code
rule_id_prefix Source code
rule_not_null Source code
rule_synonym_not_self Source code
rule_taxonid_one_name Source code
rule_types Source code
safe_right_join Source code
set_space_delim Source code
strip_prefix Source code
suppress_msg Source code
take_first_duplicate Source code
taxa_tbl Man page Source code
taxadb_dir Man page Source code
taxadb_endpoint Source code
taxadb_provider_info Man page Source code
taxadb_providers Man page Source code
taxadb_repo Man page Source code
taxadb_uri Man page Source code
td_build Man page Source code
td_connect Man page Source code
td_create Man page Source code
td_disconnect Man page Source code
td_download Man page Source code
td_filter Source code
td_manifest Man page Source code
td_validate Man page Source code
td_validate_table Source code
td_write_metadata Man page Source code
test_fixture Source code
uri_to_prefix Source code
validated_note Source code
version_max Source code
view_name Source code
write_snapshot Source code
taxadb documentation built on Aug. 31, 2026, 5:07 p.m.