apg | Get APG names |
apg_families | MOBOT family names |
apg_lookup | Lookup in the APGIII taxonomy and replace family names |
apg_orders | MOBOT order names |
bold_children | Barcode of Life taxonomic children |
bold_downstream | Retrieve all taxa names downstream in hierarchy for BOLD |
bold_search | Search Barcode of Life for taxonomic IDs |
children | Retrieve immediate children taxa for a given taxon name or... |
class2tree | Convert a list of classifications to a tree. |
classification | Retrieve the taxonomic hierarchy for a given taxon ID. |
col-defunct | COL defunct functions |
comm2sci | Get scientific names from common names. |
downstream | Retrieve the downstream taxa for a given taxon name or ID. |
eol_dataobjects | Given the identifier for a data object, return all metadata... |
eol_hierarchy-defunct | Retrieve the taxonomic hierarchy from given EOL taxonID. |
eol_invasive-defunct | Search for presence of taxonomic names in EOL invasive... |
eol_pages | Search for pages in EOL database using a taxonconceptID. |
eol_search | Search for terms in EOL database. |
eubon_capabilities | EUBON capabilities |
eubon_children | EUBON children |
eubon-defunct | DEFUNCT |
eubon_hierarchy | EUBON hierarchy |
eubon_search | EUBON taxonomy search |
fungorum | Index Fungorum |
gbif_downstream | Retrieve all taxonomic names downstream in hierarchy for GBIF |
gbif_name_usage | Lookup details for specific names in all taxonomies in GBIF. |
gbif_parse | Parse taxon names using the GBIF name parser. |
genbank2uid | Get NCBI taxonomy UID from GenBankID |
get_boldid | Get the BOLD (Barcode of Life) code for a search term. |
get_eolid | Get the EOL ID from Encyclopedia of Life from taxonomic... |
get_gbifid | Get the GBIF backbone taxon ID from taxonomic names. |
get_genes_avail-defunct | Retrieve gene sequences from NCBI by accession number. |
get_genes-defunct | Retrieve gene sequences from NCBI by accession number. |
get_id_details | Details on get_*() functions |
get_ids | Retrieve taxonomic identifiers for a given taxon name. |
get_iucn | Get a IUCN Redlist taxon |
getkey | Function to get API key. |
get_natservid | Get NatureServe taxonomic ID for a taxon name |
get_nbnid | Get the UK National Biodiversity Network ID from taxonomic... |
get_pow | Get Kew's Plants of the World code for a taxon |
get_seqs-defunct | Retrieve gene sequences from NCBI by accession number. |
get_tolid | Get the OTT id for a search term |
get_tpsid | Get the NameID codes from Tropicos for taxonomic names. |
get_tsn | Get the TSN code for a search term. |
get_ubioid-defunct | Get the uBio id for a search term |
get_uid | Get the UID codes from NCBI for taxonomic names. |
get_wiki | Get the page name for a Wiki taxon |
get_wormsid | Get Worms ID for a taxon name |
gisd_invasive-defunct | Check invasive species status for a set of species from GISD... |
gni_details | Search for taxonomic name details using the Global Names... |
gni_parse | Parse scientific names using EOL's name parser. |
gni_search | Search for taxonomic names using the Global Names Index |
gn_parse | Parse scientific names using Global Names Parser |
gnr_datasources | Global Names Resolver Data Sources |
gnr_resolve | Resolve names using Global Names Resolver |
id2name | Taxonomic IDs to taxonomic names |
ion | ION - Index to Organism Names |
iplant_resolve | iPlant name resolution |
ipni_search | Search for names in the International Plant Names Index... |
itis_acceptname | Retrieve accepted TSN and name |
itis_downstream | Retrieve all taxa names or TSNs downstream in hierarchy from... |
itis_getrecord | Get full ITIS record for one or more ITIS TSN's or lsid's. |
itis_hierarchy | ITIS hierarchy |
itis_kingdomnames | Get kingdom names |
itis_lsid | Get TSN from LSID |
itis_name-deprecated | Get taxonomic names for a given taxonomic name query. |
itis_native | Get jurisdiction data, i.e., native or not native in a... |
itis_refs | Get references related to a ITIS TSN. |
itis_taxrank | Retrieve taxonomic rank name from given TSN. |
itis_terms | Get ITIS terms, i.e., tsn's, authors, common names, and... |
iucn_getname | Get any matching IUCN species names |
iucn_id | Get an ID for a IUCN listed taxon |
iucn_status | Extractor functions for 'iucn'-class. |
iucn_summary | Get a summary from the IUCN Red List |
iucn_summary_id-defunct | DEFUNCT |
key_helpers | Helpers to set up authentication for the different providers. |
limited_print | Print a subset of a character vector |
lowest_common | Retrieve the lowest common taxon and rank for a given taxon... |
names_list | Get a random vector of species names. |
nbn_classification | Search UK National Biodiversity Network database for... |
nbn_search | Search UK National Biodiversity Network |
nbn_synonyms | Return all synonyms for a taxon name with a given id from NBN |
ncbi_children | Search NCBI for children of a taxon |
ncbi_downstream | Retrieve all taxa names downstream in hierarchy for NCBI |
ncbi_getbyid-defunct | Retrieve gene sequences from NCBI by accession number. |
ncbi_getbyname-defunct | Retrieve gene sequences from NCBI by taxon name and gene... |
ncbi_get_taxon_summary | NCBI taxon information from uids |
ncbi_search-defunct | Search for gene sequences available for taxa from NCBI. |
phylomatic_format-defunct | Get family names to make Phylomatic input object, and output... |
phylomatic_tree-defunct | Query Phylomatic for a phylogenetic tree. |
ping | Ping an API used in taxize to see if it's working. |
plantGenusNames | Vector of plant genus names from ThePlantList |
plantminer | Search for taxonomy data from Plantminer.com |
plantNames | Vector of plant species (genus - specific epithet) names from... |
pow_lookup | Lookup taxa in Kew's Plants of the World |
pow_search | Search Kew's Plants of the World |
pow_synonyms | Lookup synonyms in Kew's Plants of the World |
progressor | methods for preparing/printing info for prompts for get_*... |
rankagg | Aggregate data by given taxonomic rank |
rank_ref | Lookup-table for IDs of taxonomic ranks |
rank_ref_zoo | Lookup-table for IDs of taxonomic ranks (WoRMS) |
resolve | Resolve names from different data sources |
sci2comm | Get common names from scientific names. |
scrapenames | Resolve names using Global Names Recognition and Discovery. |
species_plantarum_binomials | Species names from Species Plantarum |
status_codes | Get HTTP status codes |
synonyms | Retrieve synonyms from various sources given input taxonomic... |
tax_agg | Aggregate species data to given taxonomic rank |
taxize-authentication | taxize authentication |
taxize_capwords | Capitalize the first letter of a character string. |
taxize_cite | Get citations and licenses for data sources used in taxize |
taxize-defunct | Defunct functions in taxize |
taxize_ldfast | Replacement function for ldply that should be faster in all... |
taxize_options | taxize options |
taxize-package | Taxonomic Information from Around the Web |
taxize-params | taxize parameters |
tax_name | Get taxonomic names for a given rank |
taxon_state | Keep track of queries in get_* functions |
taxon-state | Last taxon state object from a get_* function call |
tax_rank | Get rank for a given taxonomic name. |
theplantlist | Lookup-table for family, genus, and species names for... |
tnrs-defunct | Phylotastic Taxonomic Name Resolution Service. |
tnrs_sources-defunct | TNRS sources |
tol_resolve | Resolve names using Open Tree of Life (OTL) resolver |
tp_acceptednames-deprecated | Return all accepted names for a taxon name with a given id. |
tp_accnames | Return all accepted names for a taxon name with a given id. |
tp_classification-defunct | Return all synonyms for a taxon name with a given id. |
tp_dist | Return all distribution records for for a taxon name with a... |
tpl_families | Get The Plant List families. |
tpl_get | Get The Plant List csv files. |
tpl_search-defunct | A light wrapper around the taxonstand fxn to call... |
tp_namedistributions-deprecated | Return all distribution records for for a taxon name with a... |
tp_namereferences-deprecated | Return all reference records for for a taxon name with a... |
tp_refs | Return all reference records for for a taxon name with a... |
tp_search | Search Tropicos by scientific name, common name, or Tropicos... |
tp_summary | Return summary data a taxon name with a given id. |
tp_synonyms | Return all synonyms for a taxon name with a given id. |
ubio_classification-defunct | uBio classification |
ubio_classification_search-defunct | This function will return ClassificationBankIDs... |
ubio_id-defunct | Search uBio by namebank ID. |
ubio_ping-defunct | uBio ping |
ubio_search-defunct | This function will return NameBankIDs that match given search... |
ubio_synonyms-defunct | Search uBio for taxonomic synonyms by hierarchiesID. |
upstream | Retrieve the upstream taxa for a given taxon name or ID. |
use_eol-defunct | use eol |
vascan_search | Search the CANADENSYS Vascan API. |
worms_downstream | Retrieve all taxa names downstream in hierarchy for WORMS |
worrms_ranks | WORMS ranks |
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