API for taxize
Taxonomic Information from Around the Web

Global functions
add_uri Source code
apg Man page
apgFamilies Man page Source code
apgOrders Man page Source code
apg_GET Source code
apg_base Source code
apg_families Man page
apg_lookup Man page Source code
apg_orders Man page
argsnull Source code
as.boldid Man page Source code
as.boldid.boldid Man page Source code
as.boldid.character Man page Source code
as.boldid.data.frame Man page Source code
as.boldid.list Man page Source code
as.boldid.numeric Man page Source code
as.colid Man page Source code
as.colid.character Man page Source code
as.colid.colid Man page Source code
as.colid.data.frame Man page Source code
as.colid.list Man page Source code
as.data.frame.boldid Man page Source code
as.data.frame.colid Man page Source code
as.data.frame.eolid Man page Source code
as.data.frame.gbifid Man page Source code
as.data.frame.iucn Man page Source code
as.data.frame.natservid Man page Source code
as.data.frame.nbnid Man page Source code
as.data.frame.tolid Man page Source code
as.data.frame.tpsid Man page Source code
as.data.frame.tsn Man page Source code
as.data.frame.ubioid Man page Source code
as.data.frame.uid Man page Source code
as.data.frame.wiki Man page Source code
as.data.frame.wormsid Man page Source code
as.eolid Man page Source code
as.eolid.character Man page Source code
as.eolid.data.frame Man page Source code
as.eolid.eolid Man page Source code
as.eolid.list Man page Source code
as.eolid.numeric Man page Source code
as.gbifid Man page Source code
as.gbifid.character Man page Source code
as.gbifid.data.frame Man page Source code
as.gbifid.gbifid Man page Source code
as.gbifid.list Man page Source code
as.gbifid.numeric Man page Source code
as.iucn Man page Source code
as.iucn.character Man page Source code
as.iucn.data.frame Man page Source code
as.iucn.iucn Man page Source code
as.iucn.list Man page Source code
as.iucn.numeric Man page Source code
as.natservid Man page Source code
as.natservid.character Man page Source code
as.natservid.data.frame Man page Source code
as.natservid.list Man page Source code
as.natservid.natservid Man page Source code
as.natservid.numeric Man page Source code
as.nbnid Man page Source code
as.nbnid.character Man page Source code
as.nbnid.data.frame Man page Source code
as.nbnid.list Man page Source code
as.nbnid.nbnid Man page Source code
as.tolid Man page Source code
as.tolid.character Man page Source code
as.tolid.data.frame Man page Source code
as.tolid.list Man page Source code
as.tolid.numeric Man page Source code
as.tolid.tolid Man page Source code
as.tpsid Man page Source code
as.tpsid.character Man page Source code
as.tpsid.data.frame Man page Source code
as.tpsid.list Man page Source code
as.tpsid.numeric Man page Source code
as.tpsid.tpsid Man page Source code
as.tsn Man page Source code
as.tsn.character Man page Source code
as.tsn.data.frame Man page Source code
as.tsn.list Man page Source code
as.tsn.numeric Man page Source code
as.tsn.tsn Man page Source code
as.ubioid Man page Source code
as.ubioid.character Man page Source code
as.ubioid.data.frame Man page Source code
as.ubioid.list Man page Source code
as.ubioid.numeric Man page Source code
as.ubioid.ubioid Man page Source code
as.uid Man page Source code
as.uid.character Man page Source code
as.uid.data.frame Man page Source code
as.uid.list Man page Source code
as.uid.numeric Man page Source code
as.uid.uid Man page Source code
as.wiki Man page Source code
as.wiki.character Man page Source code
as.wiki.data.frame Man page Source code
as.wiki.list Man page Source code
as.wiki.numeric Man page Source code
as.wiki.wiki Man page Source code
as.wormsid Man page Source code
as.wormsid.character Man page Source code
as.wormsid.data.frame Man page Source code
as.wormsid.list Man page Source code
as.wormsid.numeric Man page Source code
as.wormsid.wormsid Man page Source code
as_l Source code
assert Source code
bold_ping Man page Source code
bold_search Man page Source code
by_name_search Source code
c2s_eol Source code
c2s_itis Source code
c2s_itis_ Source code
c2s_ncbi Source code
c2s_tp Source code
c2s_worms Source code
cbind.classification Man page Source code
cbind.classification_ids Man page Source code
check_boldid Source code
check_colid Source code
check_entrez_key Source code
check_eolid Source code
check_gbifid Source code
check_iucn Source code
check_iucn_getname Source code
check_lowest_ids Source code
check_natservid Source code
check_nbnid Source code
check_rows Source code
check_tolid Source code
check_tpsid Source code
check_tsn Source code
check_ubioid Source code
check_uid Source code
check_wiki Source code
check_wormsid Source code
checknull Source code
children Man page Source code
children.colid Man page Source code
children.default Man page Source code
children.ids Man page Source code
children.tsn Man page Source code
children.uid Man page Source code
children.wormsid Man page Source code
class2tree Man page Source code
class2tree_helper Source code
classification Man page Source code
classification.boldid Man page Source code
classification.colid Man page Source code
classification.default Man page Source code
classification.eolid Man page Source code
classification.gbifid Man page Source code
classification.ids Man page Source code
classification.natservid Man page Source code
classification.nbnid Man page Source code
classification.tolid Man page Source code
classification.tpsid Man page Source code
classification.tsn Man page Source code
classification.uid Man page Source code
classification.wiki Man page Source code
classification.wormsid Man page Source code
colClasses Source code
col_base Source code
col_children Man page Source code
col_classification Man page Source code
col_downstream Man page Source code
col_ping Man page Source code
col_search Man page Source code
col_synonyms Source code
collapse Source code
cols_move Source code
comm2sci Man page Source code
comm2sci.default Source code
comm2sci.tsn Source code
comm2sci.uid Source code
con_utf8 Source code
cv Source code
data_citations Source code
data_licenses Source code
dbswap Source code
defunct Man page
df2dt2tbl Source code
do_itis Source code
do_ncbi Source code
dontfollow Source code
downstream Man page Source code
downstream.colid Man page Source code
downstream.default Man page Source code
downstream.gbifid Man page Source code
downstream.ids Man page Source code
downstream.tsn Man page Source code
downstream.uid Man page Source code
dt2df Source code
dtrbsetdf Source code
eol2comm Source code
eol_dataobjects Man page Source code
eol_hierarchy Man page Source code
eol_invasive Man page Source code
eol_pages Man page Source code
eol_ping Man page Source code
eol_search Man page Source code
eol_url Source code
error_handle Source code
eubon Man page Source code
eubon_base Source code
eubon_capabilities Man page Source code
eubon_children Man page Source code
eubon_error Source code
eubon_hierarchy Man page Source code
eubon_search Man page
evalfxn Source code
failwith Source code
fg_all_updated_names Man page Source code
fg_author_search Man page Source code
fg_deprecated_names Man page Source code
fg_df Source code
fg_epithet_search Man page Source code
fg_name_by_key Man page Source code
fg_name_full_by_lsid Man page Source code
fg_name_search Man page Source code
fg_ping Man page Source code
filt Source code
fix_ranks Source code
fung_GET Source code
fung_base Source code
fung_parse Source code
fungorum Man page
gbif_downstream Man page Source code
gbif_name_backbone Source code
gbif_name_lookup Source code
gbif_name_usage Man page Source code
gbif_name_usage_children Source code
gbif_name_usage_clean Source code
gbif_parse Man page Source code
gbif_ping Man page Source code
genbank2uid Man page Source code
get_boldid Man page Source code
get_boldid_ Man page Source code
get_boldid_help Source code
get_class Source code
get_colid Man page Source code
get_colid_ Man page Source code
get_colid_help Source code
get_eol_pageid Source code
get_eolid Man page Source code
get_eolid_ Man page Source code
get_eolid_help Source code
get_gbifd_help Source code
get_gbifid Man page Source code
get_gbifid_ Man page Source code
get_genes Man page Source code
get_genes_avail Man page Source code
get_id_details Man page
get_ids Man page Source code
get_ids_ Man page Source code
get_iucn Man page Source code
get_iucn_id Source code
get_iucn_summary Source code
get_iucn_summary2 Source code
get_name Source code
get_natservid Man page Source code
get_natservid_ Man page Source code
get_natservid_help Source code
get_nbnid Man page Source code
get_nbnid_ Man page Source code
get_nbnid_help Source code
get_rank Source code
get_seqs Man page Source code
get_tolid Man page Source code
get_tolid_ Man page Source code
get_tolid_help Source code
get_tpsid Man page Source code
get_tpsid_ Man page Source code
get_tpsid_help Source code
get_tsn Man page Source code
get_tsn_ Man page Source code
get_tsn_help Source code
get_ubioid Man page Source code
get_ubioid_ Man page Source code
get_ubioid_help Source code
get_uid Man page Source code
get_uid_ Man page Source code
get_uid_help Source code
get_wiki Man page Source code
get_wiki_ Man page Source code
get_wiki_help Source code
get_wormsid Man page Source code
get_wormsid_ Man page Source code
get_wormsid_help Source code
getcsv Source code
getdata Source code
getkey Man page Source code
getsci Source code
getsourceshortnames Source code
gisd_isinvasive Man page Source code
gni_base Source code
gni_details Man page Source code
gni_parse Man page Source code
gni_parser Source code
gni_search Man page Source code
gnr_datasources Man page Source code
gnr_resolve Man page Source code
ion Man page Source code
ion_base Source code
iplant_resolve Man page Source code
ipni_ping Man page Source code
ipni_search Man page Source code
is_acc Source code
itis2comm Source code
itis_acceptname Man page Source code
itis_downstream Man page Source code
itis_foo Source code
itis_getrecord Man page Source code
itis_hierarchy Man page Source code
itis_kingdomnames Man page Source code
itis_lsid Man page Source code
itis_name Man page Source code
itis_native Man page Source code
itis_ping Man page Source code
itis_refs Man page Source code
itis_taxrank Man page Source code
itis_terms Man page Source code
iucn2comm Source code
iucn_foo Source code
iucn_getname Man page Source code
iucn_id Man page Source code
iucn_status Man page Source code
iucn_status.default Source code
iucn_status.iucn_summary Source code
iucn_summary Man page Source code
iucn_summary.character Source code
iucn_summary.default Source code
iucn_summary.iucn Source code
iucn_summary_id Man page Source code
l2 Source code
lc_helper Source code
limited_print Man page Source code
lowest_common Man page Source code
lowest_common.colid Man page Source code
lowest_common.default Man page Source code
lowest_common.gbifid Man page Source code
lowest_common.tolid Man page Source code
lowest_common.tsn Man page Source code
lowest_common.uid Man page Source code
make_boldid Source code
make_colid Source code
make_eolid Source code
make_gbifid Source code
make_generic Source code
make_iucn Source code
make_iucn_generic Source code
make_natserv Source code
make_nbnid Source code
make_tol Source code
make_tpsid Source code
make_tsn Source code
make_ubioid Source code
make_uid Source code
make_url Source code
make_wiki Source code
make_wiki_generic Source code
make_worms Source code
map_unique Source code
mapvalues Source code
match_code Source code
match_status Source code
matchwhat Source code
move_col Source code
move_col2 Source code
move_col_begin Source code
mssg Source code
names_list Man page Source code
nbn_GET Source code
nbn_GET_2 Source code
nbn_base Source code
nbn_classification Man page Source code
nbn_ping Man page Source code
nbn_search Man page Source code
nbn_synonyms Man page Source code
ncbi2comm Source code
ncbi_base Source code
ncbi_children Man page Source code
ncbi_downstream Man page Source code
ncbi_foo Source code
ncbi_get_taxon_summary Man page Source code
ncbi_getbyid Man page Source code
ncbi_getbyname Man page Source code
ncbi_ping Man page Source code
ncbi_search Man page Source code
next_best_taxon Source code
nlkupcleaner Source code
nmslwr Source code
ns_base_uri Source code
ns_worker Source code
nstop Source code
parse_full Source code
parse_ncbi Source code
parse_one Source code
parse_terse Source code
parsecoldata Source code Source code
parseeoldata Source code
parseres Source code
phylomatic_format Man page Source code
phylomatic_tree Man page Source code
ping Man page
plantGenusNames Man page
plantNames Man page
plantminer Man page Source code
plot.classtree Man page Source code
pluck Source code
pmbase Source code
pop Source code
print.classtree Man page Source code
print.tax_agg Man page Source code
process_children_ids Source code
process_ids Source code
process_lowest_ids Source code
process_stream_ids Source code
process_syn_ids Source code
prune_too_low Source code
prune_too_low_col Source code
rank_indexing Source code
rank_ref Man page
rankagg Man page Source code
rbind.classification Man page Source code
rbind.classification_ids Man page Source code
rename Source code
repeat_until_it_works Source code
resolve Man page Source code
revalue Source code
rit_acc_name Source code
sci2comm Man page Source code
sci2comm.default Man page Source code
sci2comm.iucn Man page Source code
sci2comm.tsn Man page Source code
sci2comm.uid Man page Source code
sci2comm.wormsid Man page Source code
sci_from_comm Source code
scrapenames Man page Source code
search_col Source code
search_col_child_df Source code
search_col_classification_df Source code
set_output_types Source code
should_be Source code
simp Source code
slice Source code
status_codes Man page Source code
strtrim Source code
sub_rows Source code
sub_vector Source code
synonyms Man page Source code
synonyms.colid Man page Source code
synonyms.default Man page Source code
synonyms.ids Man page Source code
synonyms.iucn Man page Source code
synonyms.nbnid Man page Source code
synonyms.tpsid Man page Source code
synonyms.tsn Man page Source code
synonyms.wormsid Man page Source code
synonyms_df Man page Source code
synonyms_df.default Source code
synonyms_df.synonyms Source code
tax_agg Man page Source code
tax_name Man page Source code
tax_rank Man page Source code
tax_rank.character Source code
tax_rank.default Source code Source code
tax_rank.numeric Source code
tax_rank_ Source code
taxa2dist Source code
taxize Man page
taxize-authentication Man page
taxize-defunct Man page
taxize-package Man page
taxize_capwords Man page Source code
taxize_cite Man page Source code
taxize_ldfast Man page Source code
taxize_sort_df Source code
taxize_ua Source code
taxonomy_table_creator Source code
tc Source code
tcnull Source code
theplantlist Man page
tnrs Man page Source code
tnrs_sources Man page Source code
toid Source code
tol_fetch_fuzzy Source code
tol_resolve Man page Source code
tp_GET Source code
tp_acceptednames Man page Source code
tp_accnames Man page Source code
tp_classification Man page Source code
tp_dist Man page Source code
tp_namedistributions Man page Source code
tp_namereferences Man page Source code
tp_refs Man page Source code
tp_search Man page Source code
tp_summary Man page Source code
tp_synonyms Man page Source code
tpl_families Man page Source code
tpl_get Man page Source code
tpl_search Man page Source code
tropicos_ping Man page Source code
tryDefault Source code
try_default Source code
try_df Source code
try_red Source code
ubio_classification Man page Source code
ubio_classification_search Man page Source code
ubio_id Man page Source code
ubio_ping Man page Source code
ubio_search Man page Source code
ubio_synonyms Man page Source code
unique_mapping Source code
upstream Man page Source code
upstream.colid Man page Source code
upstream.default Man page Source code
upstream.ids Man page Source code
upstream.tsn Man page Source code
vascan_parse Source code
vascan_ping Man page Source code
vascan_search Man page Source code
which_rank Source code
worms2comm Source code
worms_foo Source code
worms_worker Source code
xml_text_all Source code
taxize documentation built on March 21, 2018, 1:04 a.m.