Man pages for taxonomizr
Functions to Work with NCBI Accessions and Taxonomy

accessionToTaxaConvert accessions to taxa
condenseTaxaCondense a taxa table for a single read
getAccession2taxidDownload accession2taxid files from NCBI
getIdFind a given taxa by name
getNamesAndNodesDownload names and nodes files from NCBI
getTaxonomyGet taxonomic ranks for a taxa
lastNotNaReturn last not NA value
read.accession2taxidRead NCBI accession2taxid files
read.namesRead NCBI names file
read.nodesRead NCBI nodes file
streamingReadProcess a large file piecewise
trimTaxaTrim columns from taxa file
taxonomizr documentation built on May 30, 2017, 3:25 a.m.