trimTaxa: Trim columns from taxa file

In taxonomizr: Functions to Work with NCBI Accessions and Taxonomy

Trim columns from taxa file

Description

A simple script to delete the first row and then delete the first and fourth column of a four column tab delimited file and write to another file.

Usage

trimTaxa(inFile, outFile, desiredCols = c(2, 3))

Arguments

inFile	a single string giving the 4 column tab separated file to read from
outFile	a single string giving the file path to write to
desiredCols	the integer IDs for columns to pull out from file

taxonomizr documentation built on April 12, 2025, 2:11 a.m.