template_a_gee: Template for Generalized Estimating Equations (GEE) analysis...

In teal.modules.clinical: 'teal' Modules for Standard Clinical Outputs

Template for Generalized Estimating Equations (GEE) analysis module

Description

Creates a valid expression to generate an analysis table using Generalized Estimating Equations (GEE).

Usage

template_a_gee(
  output_table,
  data_model_fit = "ANL",
  dataname_lsmeans = "ANL_ADSL",
  input_arm_var = "ARM",
  ref_group = "A: Drug X",
  aval_var,
  id_var,
  arm_var,
  visit_var,
  split_covariates,
  cor_struct,
  conf_level = 0.95,
  basic_table_args = teal.widgets::basic_table_args()
)

Arguments

output_table	(character) type of output table (⁠"t_gee_cov", "t_gee_coef", "t_gee_lsmeans"⁠).
data_model_fit	(character) dataset used to fit the model by tern.gee::fit_gee().
dataname_lsmeans	(character) dataset used for alt_counts_df argument of rtables::build_table().
aval_var	(character) name of the analysis value variable.
id_var	(character) the variable name for subject id.
arm_var	(character) variable names that can be used as arm_var.
visit_var	(character) variable names that can be used as visit variable. Must be a factor in dataname.
split_covariates	(character) vector of names of variables to use as covariates in tern.gee::vars_gee().
cor_struct	(character) assumed correlation structure in tern.gee::fit_gee.
conf_level	(numeric) value for the confidence level within the range of (0, 1).
basic_table_args	(basic_table_args) optional object created by teal.widgets::basic_table_args() with settings for the module table. The argument is merged with option teal.basic_table_args and with default module arguments (hard coded in the module body). For more details, see the vignette: vignette("custom-basic-table-arguments", package = "teal.widgets").

Value

a list of expressions to generate a table or plot object.

See Also

tm_a_gee()

teal.modules.clinical documentation built on April 4, 2025, 12:35 a.m.