Man pages for tempoR
Characterizing Temporal Dysregulation
| dflatExample | A subset of the DFLAT gene sets |
| gse32472Example | A subset of the GSE32472 BPD data set |
| gse32472ExampleTempoResults | TEMPO results for the GSE32472 subset example data set |
| loadCLS | Load a categorical or continuous cls formatted file. |
| loadGCT | Load a Gene Cluster Text formatted file |
| loadGMT | Load a Gene Matrix Transposed formatted file |
| tempo.mkplot | Make a plot for a specified gene sets |
| tempo.permutationTest | Permutation testing for TEMPO |
| tempo.run | The main method. |
| tempo.runInstance | Build models for all pathways using the control data and test... |
| tempo.writeOutput | Write output |
