dflatExample | A subset of the DFLAT gene sets |
gse32472Example | A subset of the GSE32472 BPD data set |
gse32472ExampleTempoResults | TEMPO results for the GSE32472 subset example data set |
loadCLS | Load a categorical or continuous cls formatted file. |
loadGCT | Load a Gene Cluster Text formatted file |
loadGMT | Load a Gene Matrix Transposed formatted file |
tempo.mkplot | Make a plot for a specified gene sets |
tempo.permutationTest | Permutation testing for TEMPO |
tempo.run | The main method. |
tempo.runInstance | Build models for all pathways using the control data and test... |
tempo.writeOutput | Write output |
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