loadGCT: Load a Gene Cluster Text formatted file
In tempoR: Characterizing Temporal Dysregulation
Description
Usage
Arguments
Value
Examples
Description
loadGCT loads a Gene Cluster Text formatted file from a text file to the data structure used by TEMPO. A .gct
file is organized as described at the BROAD site.
Usage
1
loadGCT(target)
Arguments
target
a string indicating the location of the .gct file
Value
a matrix with sample ids as row names and gene ids as column names
Examples
1
2
3
# An example gene expression data set is included in the package in .gct format
exampleDataPath = file.path(path.package("tempoR"),"gse32472Example.gct")
exampleData = loadGCT(exampleDataPath)
tempoR documentation built on May 27, 2019, 9:05 a.m.
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Description Usage Arguments Value Examples
Description
loadGCT loads a Gene Cluster Text formatted file from a text file to the data structure used by TEMPO. A .gct
file is organized as described at the BROAD site.
Usage
1 | loadGCT(target)
|
Arguments
target |
a string indicating the location of the .gct file |
Value
a matrix with sample ids as row names and gene ids as column names
Examples
1 2 3 | # An example gene expression data set is included in the package in .gct format
exampleDataPath = file.path(path.package("tempoR"),"gse32472Example.gct")
exampleData = loadGCT(exampleDataPath)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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