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#' \code{summary} method for transfer objects
#'
#' Prints a summary of the simulation input parameters
#'
#' @param object an object of class transfer
#' @param \dots extra arguments passed to \code{\link{summary.default}}
#'
#' @return A \code{list} with three elements is returned invisibly:
#' \describe{
#' \item{parameters}{list containing all the simulation parameters}
#' \item{values}{a numeric vector of the simulated values}
#' \item{probability}{a named numeric vector giving the probability of recovering 0, 1, 2, \ldots fragments}
#' }
#'
#' @keywords methods summary
#' @export
summary.transfer = function(object, ...){
paramList = object$paramList
cat("\n", "Simulation N = ", paramList$N,"\n",
"Distance = ", paramList$d,"\n",
"Average transferred = ", paramList$lambda, "\n",
"% High persistence = ", paramList$Q, "\n",
paramList$l0, "<= % loss in first hour <=", paramList$u0,"\n",
paramList$lstar0, "<= % high persistence loss in first hour <=", paramList$ustar0,"\n",
paramList$lj, "<= % loss in j'th hour <=", paramList$uj,"\n",
paramList$lstarj, "<= % high persistence loss in j'th hour <=", paramList$ustarj,"\n",
paramList$lR, "<= % detected in lab <=", paramList$uR,"\n",
"Time = ", paramList$t,"\n", "\n")
invisible(list(parameters = object$paramList, values = summary(object$results, ...),
probability = tprob(object)))
}
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