WWTP_Impact: Freshwater stream microbiome data
In theseus: Analysis and Visualization Tools for Microbial Community Data
Description
Usage
Format
Source
References
Description
WWTP_Impact is a phyloseq object containing 16S rDNA amplicon sequencing data
from samples collected at 6 sites on 2 days (12 total samples) along
Wissahickon Creek and Sandy Run in southeastern Pennsylvania, USA. Sequencing
data was processed as described in Price et. al. (2017), and combined with
chemical data to create a phyloseq object. The raw data and scripts used to
generate this phyloseq object (as well as the phyloseq object itself) can be
obtained from the author's GitHub repository (see url below).
Usage
1
Format
A phyloseq object containing sample_data, otu_table, tax_table, and
phy_tree slots.
Source
https://github.com/JacobRPrice/WWTP_Impact_on_Stream
References
Price, J. R., Ledford, S. H., Ryan, M. O., Toran, L., Sales,
C. M. (2017). Wastewater treatment plant effluent introduces recoverable
shifts in microbial community composition in receiving streams. Sci. Total
Environ. doi:10.1016/j.scitotenv.2017.09.162.
theseus documentation built on May 2, 2019, 9:39 a.m.
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Description Usage Format Source References
Description
WWTP_Impact is a phyloseq object containing 16S rDNA amplicon sequencing data from samples collected at 6 sites on 2 days (12 total samples) along Wissahickon Creek and Sandy Run in southeastern Pennsylvania, USA. Sequencing data was processed as described in Price et. al. (2017), and combined with chemical data to create a phyloseq object. The raw data and scripts used to generate this phyloseq object (as well as the phyloseq object itself) can be obtained from the author's GitHub repository (see url below).
Usage
1 |
Format
A phyloseq object containing sample_data, otu_table, tax_table, and phy_tree slots.
Source
https://github.com/JacobRPrice/WWTP_Impact_on_Stream
References
Price, J. R., Ledford, S. H., Ryan, M. O., Toran, L., Sales, C. M. (2017). Wastewater treatment plant effluent introduces recoverable shifts in microbial community composition in receiving streams. Sci. Total Environ. doi:10.1016/j.scitotenv.2017.09.162.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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