inst/doc/tidyplots.R

In tidyplots: Tidy Plots for Scientific Papers

## ----include = FALSE----------------------------------------------------------
knitr::opts_chunk$set(
  collapse = TRUE,
  comment = "#>",
  results = FALSE,
  message = FALSE,
  warning = FALSE,
  fig.align = "center",
  fig.width = 5,
  fig.height = 2.6,
  dpi = 300
)

## ----eval=FALSE---------------------------------------------------------------
# install.packages("tidyverse")
# install.packages("tidyplots")

## ----message=TRUE, results='markup'-------------------------------------------
library(tidyplots)
study

## ----eval=FALSE---------------------------------------------------------------
# library(tidyplots)

## -----------------------------------------------------------------------------
study |> 
  tidyplot(x = treatment, y = score)

## -----------------------------------------------------------------------------
study |> 
  tidyplot(x = treatment, y = score) |> 
  add_data_points()

## -----------------------------------------------------------------------------
study |> 
  tidyplot(x = treatment, y = score) |> 
  add_data_points() |> 
  add_mean_bar(alpha = 0.4)

## -----------------------------------------------------------------------------
study |> 
  tidyplot(x = treatment, y = score) |> 
  add_data_points() |> 
  add_mean_dash() |> 
  add_sem_errorbar()

## -----------------------------------------------------------------------------
study |> 
  tidyplot(x = group, y = score, color = dose) |> 
  add_data_points() |> 
  add_mean_dash() |> 
  add_sem_errorbar()

## -----------------------------------------------------------------------------
study |> 
  tidyplot(x = group, y = score, color = dose) |> 
  add_data_points() |> 
  add_mean_dash() |> 
  add_sem_errorbar() |> 
  remove_legend_title() |> 
  remove_y_axis()

## -----------------------------------------------------------------------------
study |> 
  tidyplot(x = treatment, y = score, color = treatment) |> 
  add_data_points() |> 
  add_mean_bar(alpha = 0.4) |> 
  add_sem_errorbar()

## -----------------------------------------------------------------------------
study |> 
  tidyplot(x = treatment, y = score, color = treatment) |> 
  add_data_points_beeswarm(shape = 1) |>
  add_mean_bar(alpha = 0.4) |> 
  add_sem_errorbar() |> 
  adjust_size(width = 20, height = 20)

## -----------------------------------------------------------------------------
study |> 
  tidyplot(x = treatment, y = score, color = treatment) |> 
  add_data_points() |> 
  add_mean_bar(alpha = 0.4) |> 
  add_sem_errorbar() |> 
  adjust_title("This is my fantastic plot title") |>
  adjust_x_axis_title("Treatment group") |>
  adjust_y_axis_title("Disease score") |>
  adjust_legend_title("") |>
  adjust_caption("Here goes the caption")

## -----------------------------------------------------------------------------
study |> 
  tidyplot(x = treatment, y = score, color = treatment) |> 
  add_data_points() |> 
  add_mean_bar(alpha = 0.4) |> 
  add_sem_errorbar() |> 
  adjust_colors(new_colors = c("#644296","#F08533","#3B78B0", "#D1352C"))

## -----------------------------------------------------------------------------
study |> 
  tidyplot(x = treatment, y = score, color = treatment) |> 
  add_data_points() |> 
  add_mean_bar(alpha = 0.4) |> 
  add_sem_errorbar() |> 
  adjust_colors(new_colors = colors_discrete_seaside)

## -----------------------------------------------------------------------------
study |> 
  tidyplot(x = treatment, y = score, color = treatment) |> 
  add_data_points() |> 
  add_mean_bar(alpha = 0.4) |> 
  add_sem_errorbar() |> 
  rename_x_axis_labels(new_names = c("A" = "This",
                                     "B" = "is",
                                     "C" = "totally",
                                     "D" = "new"))

## -----------------------------------------------------------------------------
study |> 
  tidyplot(x = treatment, y = score, color = treatment) |> 
  add_data_points() |> 
  add_mean_bar(alpha = 0.4) |> 
  add_sem_errorbar() |> 
  reorder_x_axis_labels("D", "C")

## -----------------------------------------------------------------------------
study |> 
  tidyplot(x = treatment, y = score, color = treatment) |> 
  add_data_points() |> 
  add_mean_bar(alpha = 0.4) |> 
  add_sem_errorbar() |> 
  sort_x_axis_labels()

## -----------------------------------------------------------------------------
study |> 
  tidyplot(x = treatment, y = score, color = treatment) |> 
  add_data_points() |> 
  add_mean_bar(alpha = 0.4) |> 
  add_sem_errorbar() |> 
  reverse_x_axis_labels()

## -----------------------------------------------------------------------------
study |> 
  tidyplot(x = treatment, y = score, color = treatment) |> 
  add_data_points() |> 
  add_sem_errorbar() |> 
  add_mean_dash() |> 
  theme_tidyplot()

## -----------------------------------------------------------------------------
study |> 
  tidyplot(x = treatment, y = score, color = treatment) |> 
  add_data_points() |> 
  add_sem_errorbar() |> 
  add_mean_dash() |> 
  theme_ggplot2()

## -----------------------------------------------------------------------------
study |> 
  tidyplot(x = treatment, y = score, color = treatment) |> 
  add_data_points() |> 
  add_sem_errorbar() |> 
  add_mean_dash() |> 
  theme_minimal_y() |> 
  remove_x_axis_line()

## -----------------------------------------------------------------------------
study |> 
  tidyplot(x = group, y = score, color = group) |> 
  add_data_points() |> 
  add_sem_errorbar() |> 
  add_mean_dash() |> 
  split_plot(by = dose)

## ----eval=FALSE---------------------------------------------------------------
# study |>
#   tidyplot(x = group, y = score, color = group) |>
#   add_data_points() |>
#   add_sem_errorbar() |>
#   add_mean_dash() |>
#   save_plot("my_plot.pdf")