loci_transitions: Find transitions

In tidypopgen: Tidy Population Genetics

Find transitions

Description

Use the loci table to define which loci are transitions

Usage

loci_transitions(.x, .col = "genotypes", ...)

## S3 method for class 'tbl_df'
loci_transitions(.x, .col = "genotypes", ...)

## S3 method for class 'vctrs_bigSNP'
loci_transitions(.x, .col = "genotypes", ...)

Arguments

.x	a vector of class vctrs_bigSNP (usually the genotype column of a gen_tibble object), or a gen_tibble.
.col	the column to be used when a tibble (or grouped tibble is passed directly to the function). This defaults to "genotypes" and can only take that value. There is no need for the user to set it, but it is included to resolve certain tidyselect operations.
...	other arguments passed to specific methods.

Value

a logical vector defining which loci are transitions

Examples

example_gt <- load_example_gt("gen_tbl")
example_gt %>% loci_transitions()

tidypopgen documentation built on Aug. 28, 2025, 1:08 a.m.