tigreBrowserWriter: 'tigreBrowser' Database Writer
Version 0.1.4

Write modelling results into a database for 'tigreBrowser', a web-based tool for browsing figures and summary data of independent model fits, such as Gaussian process models fitted for each gene or other genomic element. The browser is available at .

AuthorAntti Honkela [aut, cre], Miika-Petteri Matikainen [aut]
Date of publication2016-12-12 18:16:35
MaintainerAntti Honkela <antti.honkela@helsinki.fi>
LicenseAGPL-3
Version0.1.4
URL https://github.com/PROBIC/tigreBrowserWriter
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("tigreBrowserWriter")

Getting started

README.md

Popular man pages

closeDb: Finalise and close the database
initializeDb: Create and initialize a database
insertAliases: Insert aliases
insertFigureData: Insert figure data directly to the database
insertFigures: Insert figure links
insertSupplementaryData: Insert supplementary data
insertZScores: Insert data z-scores used for filtering
See all...

All man pages Function index File listing

Man pages

closeDb: Finalise and close the database
initializeDb: Create and initialize a database
insertAliases: Insert aliases
insertFigureData: Insert figure data directly to the database
insertFigures: Insert figure links
insertResults: Insert results
insertSupplementaryData: Insert supplementary data
insertZScores: Insert data z-scores used for filtering

Functions

addAndGetAliasId Source code
addAndGetDatasetId Source code
addAndGetExperimentId Source code
addAndGetExperimentSetId Source code
addAndGetFigureId Source code
addAndGetProbeGeneIds Source code
addAndGetRegulatorId Source code
addAndGetSupplementaryDataId Source code
addExperimentSetExperiments Source code
addFigures Source code
addGeneAliases Source code
addResults Source code
addSupplementaryData Source code
addTargetSet Source code
addZscores Source code
closeDb Man page Source code
createTables Source code
getLoopVariables Source code
getProbeGeneId Source code
getVersion Source code
initializeDb Man page Source code
insertAliases Man page Source code
insertFigureData Man page Source code
insertFigures Man page Source code
insertResults Man page Source code
insertSupplementaryData Man page Source code
insertZScores Man page Source code
openConnection Source code

Files

NAMESPACE
R
R/database.R
R/interface.R
README.md
MD5
DESCRIPTION
man
man/insertResults.Rd
man/closeDb.Rd
man/insertZScores.Rd
man/initializeDb.Rd
man/insertSupplementaryData.Rd
man/insertFigures.Rd
man/insertFigureData.Rd
man/insertAliases.Rd
tigreBrowserWriter documentation built on May 19, 2017, 2:14 p.m.