insertFigures: Insert figure links

In tigreBrowserWriter: 'tigreBrowser' Database Writer

Description

Insert figure links

Usage

insertFigures(db, experimentName, regulatorName, filename, name = "",
  description = "", priority = 0)

Arguments

db	Database object created by initializeDb
experimentName	Experiment name
regulatorName	Regulator name (more detailed experiment identifier)
filename	URL path to figures. The path can contain the special form ${probe_name} which will be substituted by the name of the entity (gene, ...) by the browser.
name	Optional figure name
description	Optional figure description
priority	Integer priority used for sorting figures (default: 0)

Value

An updated database object db

Examples

  db <- initializeDb("", "My Dataset")
  logl <- c(-4.0, -2.0, 0.0)
  names(logl) <- c("A", "B", "C")
  baselogl <- c(1.0, -1.0, 4.0)
  names(baselogl) <- names(logl)
  db <- insertResults(db, "testexperiment", "testregulator", "",
                     logl, baselineloglikelihoods=baselogl)
  db <- insertFigures(db, "testexperiment", "testregulator",
                      "http://foo.invalid/path/${probe_name}_fit.png")
  closeDb(db)

tigreBrowserWriter documentation built on May 2, 2019, 12:21 p.m.