timeordered: Time-ordered and time-aggregated network analyses

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Methods for incorporating time into network analysis. Construction of time-ordered networks (temporal graphs). Shortest-time and shortest-path-length analyses. Resource spread calculations. Data resampling and rarefaction for null model construction. Reduction to time-aggregated networks with variable window sizes; application of common descriptive statistics to these networks. Vector clock latencies. Plotting functionalities.

Author
Benjamin Blonder
Date of publication
2015-01-22 09:25:27
Maintainer
Benjamin Blonder <bblonder@gmail.com>
License
GPL-3
Version
0.9.8

View on CRAN

Man pages

ants
Ant interaction data
applynetworkfunction
Applies a function (typically a descriptive statistic) to...
generatelatencies
Generates vector-clock latencies for each individual at each...
generatenetworkslices
Generates multiple time-aggregated networks from a...
generatetimeaggregatednetwork
Constructs a weighted time-aggregated network from a...
generatetimedeltas
Constructs matrix of sequential time windows suitable for...
generatetimelags
Constructs matrix of increasingly large time windows suitable...
generatetonetwork
Generates a time-ordered network from an interaction list.
generatetonetworkfromvel
Generates a time-ordered network from a data frame listing...
generatevertexedgelist
Generates a data frame listing all directed edges in a...
maxpoints
Determines the maximum value of each row of a matrix; used as...
midpoints
Determines the mean value of each row of a matrix; used as a...
plotnetworkslices
Plots a time-aggregated network
plottanet
Plots a time-aggregated network.
plottonet
Plots a time-ordered network.
randomize_edges_helper
Does all the work for 'edge_randomization' and...
randomizeidentities
Resamples data based on vertex identity.
randomizetimes
Resamples data based on event time.
randomly_permuted_times
Randomize temporal networks
rarefy
Simulates the effect of insufficient sampling by data...
shortesthoppath
Determines a path (shortest by the least number of unique...
shortesttimepath
Determines a path (shortest by the least time) between a...
spreadanalysis
Simulates the perfect spread of a resource on a time-ordered...
swap
Swaps two elements in a data frame. An internal function.
timeordered-package
Time-ordered and time-aggregated network analyses
transformspreadbyindividual
A helper function to assess differences in spreading...

Files in this package

timeordered
timeordered/NAMESPACE
timeordered/data
timeordered/data/ants.rda
timeordered/R
timeordered/R/generatetonetwork.R
timeordered/R/midpoints.R
timeordered/R/plottonet.R
timeordered/R/randomizetimes.R
timeordered/R/timeordered-internal.R
timeordered/R/rarefy.R
timeordered/R/null_models.R
timeordered/R/randomizeidentities.R
timeordered/R/transformspreadbyindividual.R
timeordered/R/generatetimedeltas.R
timeordered/R/spreadanalysis.R
timeordered/R/plotnetworkslices.R
timeordered/R/generatelatencies.R
timeordered/R/shortesthoppath.R
timeordered/R/generatetimelags.R
timeordered/R/generatenetworkslices.R
timeordered/R/randomization_procedures.R
timeordered/R/applynetworkfunction.R
timeordered/R/maxpoints.R
timeordered/R/shortesttimepath.R
timeordered/R/generatevertexedgelist.R
timeordered/R/generatetonetworkfromvel.R
timeordered/R/plottanet.R
timeordered/R/generatetimeaggregatednetwork.R
timeordered/MD5
timeordered/DESCRIPTION
timeordered/man
timeordered/man/generatetonetworkfromvel.Rd
timeordered/man/swap.Rd
timeordered/man/generatenetworkslices.Rd
timeordered/man/generatetimedeltas.Rd
timeordered/man/randomizetimes.Rd
timeordered/man/generatelatencies.Rd
timeordered/man/timeordered-package.Rd
timeordered/man/rarefy.Rd
timeordered/man/generatevertexedgelist.Rd
timeordered/man/generatetimelags.Rd
timeordered/man/plottanet.Rd
timeordered/man/randomize_edges_helper.Rd
timeordered/man/midpoints.Rd
timeordered/man/generatetimeaggregatednetwork.Rd
timeordered/man/plottonet.Rd
timeordered/man/randomly_permuted_times.Rd
timeordered/man/shortesttimepath.Rd
timeordered/man/plotnetworkslices.Rd
timeordered/man/transformspreadbyindividual.Rd
timeordered/man/shortesthoppath.Rd
timeordered/man/randomizeidentities.Rd
timeordered/man/maxpoints.Rd
timeordered/man/applynetworkfunction.Rd
timeordered/man/spreadanalysis.Rd
timeordered/man/ants.Rd
timeordered/man/generatetonetwork.Rd