Methods for incorporating time into network analysis. Construction of timeordered networks (temporal graphs). Shortesttime and shortestpathlength analyses. Resource spread calculations. Data resampling and rarefaction for null model construction. Reduction to timeaggregated networks with variable window sizes; application of common descriptive statistics to these networks. Vector clock latencies. Plotting functionalities.
Author  Benjamin Blonder 
Date of publication  20150122 09:25:27 
Maintainer  Benjamin Blonder <bblonder@gmail.com> 
License  GPL3 
Version  0.9.8 
Package repository  View on CRAN 
Installation  Install the latest version of this package by entering the following in R:



All man pages Function index File listing
Man pages  

ants: Ant interaction data  
applynetworkfunction: Applies a function (typically a descriptive statistic) to...  
generatelatencies: Generates vectorclock latencies for each individual at each...  
generatenetworkslices: Generates multiple timeaggregated networks from a...  
generatetimeaggregatednetwork: Constructs a weighted timeaggregated network from a...  
generatetimedeltas: Constructs matrix of sequential time windows suitable for...  
generatetimelags: Constructs matrix of increasingly large time windows suitable...  
generatetonetwork: Generates a timeordered network from an interaction list.  
generatetonetworkfromvel: Generates a timeordered network from a data frame listing...  
generatevertexedgelist: Generates a data frame listing all directed edges in a...  
maxpoints: Determines the maximum value of each row of a matrix; used as...  
midpoints: Determines the mean value of each row of a matrix; used as a...  
plotnetworkslices: Plots a timeaggregated network  
plottanet: Plots a timeaggregated network.  
plottonet: Plots a timeordered network.  
randomize_edges_helper: Does all the work for 'edge_randomization' and...  
randomizeidentities: Resamples data based on vertex identity.  
randomizetimes: Resamples data based on event time.  
randomly_permuted_times: Randomize temporal networks  
rarefy: Simulates the effect of insufficient sampling by data...  
shortesthoppath: Determines a path (shortest by the least number of unique...  
shortesttimepath: Determines a path (shortest by the least time) between a...  
spreadanalysis: Simulates the perfect spread of a resource on a timeordered...  
swap: Swaps two elements in a data frame. An internal function.  
timeorderedpackage: Timeordered and timeaggregated network analyses  
transformspreadbyindividual: A helper function to assess differences in spreading... 
Functions  

ants  Man page 
applynetworkfunction  Man page Source code 
contact_randomization  Man page Source code Source code 
edge_randomization  Man page Source code Source code 
generatelatencies  Man page Source code 
generatenetworkslices  Man page Source code 
generatetimeaggregatednetwork  Man page Source code 
generatetimedeltas  Man page Source code 
generatetimelags  Man page Source code 
generatetonetwork  Man page Source code 
generatetonetworkfromvel  Man page Source code 
generatevertexedgelist  Man page Source code 
maxpoints  Man page Source code 
midpoints  Man page Source code 
plotnetworkslices  Man page Source code 
plottanet  Man page Source code 
plottonet  Man page Source code 
random_times  Man page Source code Source code 
randomize_edges_helper  Man page Source code Source code 
randomized_contacts  Man page Source code Source code 
randomized_edges  Man page Source code Source code 
randomizeidentities  Man page Source code 
randomizetimes  Man page Source code 
randomly_permuted_times  Man page Man page Source code Source code 
rarefy  Man page Source code 
shortesthoppath  Man page Source code 
shortesttimepath  Man page Source code 
spreadanalysis  Man page Source code 
swap  Man page Source code Source code 
time_reversal  Man page Source code Source code 
timeordered  Man page 
timeorderedpackage  Man page 
total_randomization  Man page Source code 
transformspreadbyindividual  Man page Source code 
vertex_randomization  Man page Source code 
Files  

NAMESPACE
 
data
 
data/ants.rda
 
R
 
R/generatetonetwork.R  
R/midpoints.R  
R/plottonet.R  
R/randomizetimes.R  
R/timeorderedinternal.R  
R/rarefy.R  
R/null_models.R  
R/randomizeidentities.R  
R/transformspreadbyindividual.R  
R/generatetimedeltas.R  
R/spreadanalysis.R  
R/plotnetworkslices.R  
R/generatelatencies.R  
R/shortesthoppath.R  
R/generatetimelags.R  
R/generatenetworkslices.R  
R/randomization_procedures.R  
R/applynetworkfunction.R  
R/maxpoints.R  
R/shortesttimepath.R  
R/generatevertexedgelist.R  
R/generatetonetworkfromvel.R  
R/plottanet.R  
R/generatetimeaggregatednetwork.R  
MD5
 
DESCRIPTION
 
man
 
man/generatetonetworkfromvel.Rd  
man/swap.Rd  
man/generatenetworkslices.Rd  
man/generatetimedeltas.Rd  
man/randomizetimes.Rd  
man/generatelatencies.Rd  
man/timeorderedpackage.Rd  
man/rarefy.Rd  
man/generatevertexedgelist.Rd  
man/generatetimelags.Rd  
man/plottanet.Rd  
man/randomize_edges_helper.Rd  
man/midpoints.Rd  
man/generatetimeaggregatednetwork.Rd  
man/plottonet.Rd  
man/randomly_permuted_times.Rd  
man/shortesttimepath.Rd  
man/plotnetworkslices.Rd  
man/transformspreadbyindividual.Rd  
man/shortesthoppath.Rd  
man/randomizeidentities.Rd  
man/maxpoints.Rd  
man/applynetworkfunction.Rd  
man/spreadanalysis.Rd  
man/ants.Rd  
man/generatetonetwork.Rd 
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