timeordered: Time-ordered and time-aggregated network analyses

Methods for incorporating time into network analysis. Construction of time-ordered networks (temporal graphs). Shortest-time and shortest-path-length analyses. Resource spread calculations. Data resampling and rarefaction for null model construction. Reduction to time-aggregated networks with variable window sizes; application of common descriptive statistics to these networks. Vector clock latencies. Plotting functionalities.

AuthorBenjamin Blonder
Date of publication2015-01-22 09:25:27
MaintainerBenjamin Blonder <bblonder@gmail.com>
LicenseGPL-3
Version0.9.8

View on CRAN

Man pages

ants: Ant interaction data

applynetworkfunction: Applies a function (typically a descriptive statistic) to...

generatelatencies: Generates vector-clock latencies for each individual at each...

generatenetworkslices: Generates multiple time-aggregated networks from a...

generatetimeaggregatednetwork: Constructs a weighted time-aggregated network from a...

generatetimedeltas: Constructs matrix of sequential time windows suitable for...

generatetimelags: Constructs matrix of increasingly large time windows suitable...

generatetonetwork: Generates a time-ordered network from an interaction list.

generatetonetworkfromvel: Generates a time-ordered network from a data frame listing...

generatevertexedgelist: Generates a data frame listing all directed edges in a...

maxpoints: Determines the maximum value of each row of a matrix; used as...

midpoints: Determines the mean value of each row of a matrix; used as a...

plotnetworkslices: Plots a time-aggregated network

plottanet: Plots a time-aggregated network.

plottonet: Plots a time-ordered network.

randomize_edges_helper: Does all the work for 'edge_randomization' and...

randomizeidentities: Resamples data based on vertex identity.

randomizetimes: Resamples data based on event time.

randomly_permuted_times: Randomize temporal networks

rarefy: Simulates the effect of insufficient sampling by data...

shortesthoppath: Determines a path (shortest by the least number of unique...

shortesttimepath: Determines a path (shortest by the least time) between a...

spreadanalysis: Simulates the perfect spread of a resource on a time-ordered...

swap: Swaps two elements in a data frame. An internal function.

timeordered-package: Time-ordered and time-aggregated network analyses

transformspreadbyindividual: A helper function to assess differences in spreading...

Files in this package

timeordered
timeordered/NAMESPACE
timeordered/data
timeordered/data/ants.rda
timeordered/R
timeordered/R/generatetonetwork.R timeordered/R/midpoints.R timeordered/R/plottonet.R timeordered/R/randomizetimes.R timeordered/R/timeordered-internal.R timeordered/R/rarefy.R timeordered/R/null_models.R timeordered/R/randomizeidentities.R timeordered/R/transformspreadbyindividual.R timeordered/R/generatetimedeltas.R timeordered/R/spreadanalysis.R timeordered/R/plotnetworkslices.R timeordered/R/generatelatencies.R timeordered/R/shortesthoppath.R timeordered/R/generatetimelags.R timeordered/R/generatenetworkslices.R timeordered/R/randomization_procedures.R timeordered/R/applynetworkfunction.R timeordered/R/maxpoints.R timeordered/R/shortesttimepath.R timeordered/R/generatevertexedgelist.R timeordered/R/generatetonetworkfromvel.R timeordered/R/plottanet.R timeordered/R/generatetimeaggregatednetwork.R
timeordered/MD5
timeordered/DESCRIPTION
timeordered/man
timeordered/man/generatetonetworkfromvel.Rd timeordered/man/swap.Rd timeordered/man/generatenetworkslices.Rd timeordered/man/generatetimedeltas.Rd timeordered/man/randomizetimes.Rd timeordered/man/generatelatencies.Rd timeordered/man/timeordered-package.Rd timeordered/man/rarefy.Rd timeordered/man/generatevertexedgelist.Rd timeordered/man/generatetimelags.Rd timeordered/man/plottanet.Rd timeordered/man/randomize_edges_helper.Rd timeordered/man/midpoints.Rd timeordered/man/generatetimeaggregatednetwork.Rd timeordered/man/plottonet.Rd timeordered/man/randomly_permuted_times.Rd timeordered/man/shortesttimepath.Rd timeordered/man/plotnetworkslices.Rd timeordered/man/transformspreadbyindividual.Rd timeordered/man/shortesthoppath.Rd timeordered/man/randomizeidentities.Rd timeordered/man/maxpoints.Rd timeordered/man/applynetworkfunction.Rd timeordered/man/spreadanalysis.Rd timeordered/man/ants.Rd timeordered/man/generatetonetwork.Rd

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