timeordered: Time-ordered and time-aggregated network analyses

Methods for incorporating time into network analysis. Construction of time-ordered networks (temporal graphs). Shortest-time and shortest-path-length analyses. Resource spread calculations. Data resampling and rarefaction for null model construction. Reduction to time-aggregated networks with variable window sizes; application of common descriptive statistics to these networks. Vector clock latencies. Plotting functionalities.

AuthorBenjamin Blonder
Date of publication2015-01-22 09:25:27
MaintainerBenjamin Blonder <bblonder@gmail.com>
LicenseGPL-3
Version0.9.8

View on CRAN

Man pages

ants: Ant interaction data

applynetworkfunction: Applies a function (typically a descriptive statistic) to...

generatelatencies: Generates vector-clock latencies for each individual at each...

generatenetworkslices: Generates multiple time-aggregated networks from a...

generatetimeaggregatednetwork: Constructs a weighted time-aggregated network from a...

generatetimedeltas: Constructs matrix of sequential time windows suitable for...

generatetimelags: Constructs matrix of increasingly large time windows suitable...

generatetonetwork: Generates a time-ordered network from an interaction list.

generatetonetworkfromvel: Generates a time-ordered network from a data frame listing...

generatevertexedgelist: Generates a data frame listing all directed edges in a...

maxpoints: Determines the maximum value of each row of a matrix; used as...

midpoints: Determines the mean value of each row of a matrix; used as a...

plotnetworkslices: Plots a time-aggregated network

plottanet: Plots a time-aggregated network.

plottonet: Plots a time-ordered network.

randomize_edges_helper: Does all the work for 'edge_randomization' and...

randomizeidentities: Resamples data based on vertex identity.

randomizetimes: Resamples data based on event time.

randomly_permuted_times: Randomize temporal networks

rarefy: Simulates the effect of insufficient sampling by data...

shortesthoppath: Determines a path (shortest by the least number of unique...

shortesttimepath: Determines a path (shortest by the least time) between a...

spreadanalysis: Simulates the perfect spread of a resource on a time-ordered...

swap: Swaps two elements in a data frame. An internal function.

timeordered-package: Time-ordered and time-aggregated network analyses

transformspreadbyindividual: A helper function to assess differences in spreading...

Functions

ants Man page
applynetworkfunction Man page
contact_randomization Man page
edge_randomization Man page
generatelatencies Man page
generatenetworkslices Man page
generatetimeaggregatednetwork Man page
generatetimedeltas Man page
generatetimelags Man page
generatetonetwork Man page
generatetonetworkfromvel Man page
generatevertexedgelist Man page
maxpoints Man page
midpoints Man page
plotnetworkslices Man page
plottanet Man page
plottonet Man page
randomized_contacts Man page
randomized_edges Man page
randomize_edges_helper Man page
randomizeidentities Man page
randomizetimes Man page
randomly_permuted_times Man page
randomly_permuted_times Man page
random_times Man page
rarefy Man page
shortesthoppath Man page
shortesttimepath Man page
spreadanalysis Man page
swap Man page
timeordered Man page
timeordered-package Man page
time_reversal Man page
total_randomization Man page
transformspreadbyindividual Man page
vertex_randomization Man page

Files

timeordered
timeordered/NAMESPACE
timeordered/data
timeordered/data/ants.rda
timeordered/R
timeordered/R/generatetonetwork.R timeordered/R/midpoints.R timeordered/R/plottonet.R timeordered/R/randomizetimes.R timeordered/R/timeordered-internal.R timeordered/R/rarefy.R timeordered/R/null_models.R timeordered/R/randomizeidentities.R timeordered/R/transformspreadbyindividual.R timeordered/R/generatetimedeltas.R timeordered/R/spreadanalysis.R timeordered/R/plotnetworkslices.R timeordered/R/generatelatencies.R timeordered/R/shortesthoppath.R timeordered/R/generatetimelags.R timeordered/R/generatenetworkslices.R timeordered/R/randomization_procedures.R timeordered/R/applynetworkfunction.R timeordered/R/maxpoints.R timeordered/R/shortesttimepath.R timeordered/R/generatevertexedgelist.R timeordered/R/generatetonetworkfromvel.R timeordered/R/plottanet.R timeordered/R/generatetimeaggregatednetwork.R
timeordered/MD5
timeordered/DESCRIPTION
timeordered/man
timeordered/man/generatetonetworkfromvel.Rd timeordered/man/swap.Rd timeordered/man/generatenetworkslices.Rd timeordered/man/generatetimedeltas.Rd timeordered/man/randomizetimes.Rd timeordered/man/generatelatencies.Rd timeordered/man/timeordered-package.Rd timeordered/man/rarefy.Rd timeordered/man/generatevertexedgelist.Rd timeordered/man/generatetimelags.Rd timeordered/man/plottanet.Rd timeordered/man/randomize_edges_helper.Rd timeordered/man/midpoints.Rd timeordered/man/generatetimeaggregatednetwork.Rd timeordered/man/plottonet.Rd timeordered/man/randomly_permuted_times.Rd timeordered/man/shortesttimepath.Rd timeordered/man/plotnetworkslices.Rd timeordered/man/transformspreadbyindividual.Rd timeordered/man/shortesthoppath.Rd timeordered/man/randomizeidentities.Rd timeordered/man/maxpoints.Rd timeordered/man/applynetworkfunction.Rd timeordered/man/spreadanalysis.Rd timeordered/man/ants.Rd timeordered/man/generatetonetwork.Rd

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