Methods for incorporating time into network analysis. Construction of time-ordered networks (temporal graphs). Shortest-time and shortest-path-length analyses. Resource spread calculations. Data resampling and rarefaction for null model construction. Reduction to time-aggregated networks with variable window sizes; application of common descriptive statistics to these networks. Vector clock latencies. Plotting functionalities.

Author | Benjamin Blonder |

Date of publication | 2015-01-22 09:25:27 |

Maintainer | Benjamin Blonder <bblonder@gmail.com> |

License | GPL-3 |

Version | 0.9.8 |

**ants:** Ant interaction data

**applynetworkfunction:** Applies a function (typically a descriptive statistic) to...

**generatelatencies:** Generates vector-clock latencies for each individual at each...

**generatenetworkslices:** Generates multiple time-aggregated networks from a...

**generatetimeaggregatednetwork:** Constructs a weighted time-aggregated network from a...

**generatetimedeltas:** Constructs matrix of sequential time windows suitable for...

**generatetimelags:** Constructs matrix of increasingly large time windows suitable...

**generatetonetwork:** Generates a time-ordered network from an interaction list.

**generatetonetworkfromvel:** Generates a time-ordered network from a data frame listing...

**generatevertexedgelist:** Generates a data frame listing all directed edges in a...

**maxpoints:** Determines the maximum value of each row of a matrix; used as...

**midpoints:** Determines the mean value of each row of a matrix; used as a...

**plotnetworkslices:** Plots a time-aggregated network

**plottanet:** Plots a time-aggregated network.

**plottonet:** Plots a time-ordered network.

**randomize_edges_helper:** Does all the work for 'edge_randomization' and...

**randomizeidentities:** Resamples data based on vertex identity.

**randomizetimes:** Resamples data based on event time.

**randomly_permuted_times:** Randomize temporal networks

**rarefy:** Simulates the effect of insufficient sampling by data...

**shortesthoppath:** Determines a path (shortest by the least number of unique...

**shortesttimepath:** Determines a path (shortest by the least time) between a...

**spreadanalysis:** Simulates the perfect spread of a resource on a time-ordered...

**swap:** Swaps two elements in a data frame. An internal function.

**timeordered-package:** Time-ordered and time-aggregated network analyses

**transformspreadbyindividual:** A helper function to assess differences in spreading...

timeordered

timeordered/NAMESPACE

timeordered/data

timeordered/data/ants.rda

timeordered/R

timeordered/R/generatetonetwork.R
timeordered/R/midpoints.R
timeordered/R/plottonet.R
timeordered/R/randomizetimes.R
timeordered/R/timeordered-internal.R
timeordered/R/rarefy.R
timeordered/R/null_models.R
timeordered/R/randomizeidentities.R
timeordered/R/transformspreadbyindividual.R
timeordered/R/generatetimedeltas.R
timeordered/R/spreadanalysis.R
timeordered/R/plotnetworkslices.R
timeordered/R/generatelatencies.R
timeordered/R/shortesthoppath.R
timeordered/R/generatetimelags.R
timeordered/R/generatenetworkslices.R
timeordered/R/randomization_procedures.R
timeordered/R/applynetworkfunction.R
timeordered/R/maxpoints.R
timeordered/R/shortesttimepath.R
timeordered/R/generatevertexedgelist.R
timeordered/R/generatetonetworkfromvel.R
timeordered/R/plottanet.R
timeordered/R/generatetimeaggregatednetwork.R
timeordered/MD5

timeordered/DESCRIPTION

timeordered/man

timeordered/man/generatetonetworkfromvel.Rd
timeordered/man/swap.Rd
timeordered/man/generatenetworkslices.Rd
timeordered/man/generatetimedeltas.Rd
timeordered/man/randomizetimes.Rd
timeordered/man/generatelatencies.Rd
timeordered/man/timeordered-package.Rd
timeordered/man/rarefy.Rd
timeordered/man/generatevertexedgelist.Rd
timeordered/man/generatetimelags.Rd
timeordered/man/plottanet.Rd
timeordered/man/randomize_edges_helper.Rd
timeordered/man/midpoints.Rd
timeordered/man/generatetimeaggregatednetwork.Rd
timeordered/man/plottonet.Rd
timeordered/man/randomly_permuted_times.Rd
timeordered/man/shortesttimepath.Rd
timeordered/man/plotnetworkslices.Rd
timeordered/man/transformspreadbyindividual.Rd
timeordered/man/shortesthoppath.Rd
timeordered/man/randomizeidentities.Rd
timeordered/man/maxpoints.Rd
timeordered/man/applynetworkfunction.Rd
timeordered/man/spreadanalysis.Rd
timeordered/man/ants.Rd
timeordered/man/generatetonetwork.Rd
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