tmle.npvi: Targeted Learning of a NP Importance of a Continuous Exposure
Version 0.10.0

Targeted minimum loss estimation (TMLE) of a non-parametric variable importance measure of a continuous exposure 'X' on an outcome 'Y', taking baseline covariates 'W' into account.

AuthorAntoine Chambaz, Pierre Neuvial
Date of publication2015-05-22 18:59:02
MaintainerPierre Neuvial <pierre.neuvial@genopole.cnrs.fr>
LicenseGPL
Version0.10.0
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("tmle.npvi")

Popular man pages

getLightFit: Makes Lighter Fitted Object
getObs.NPVI: Retrieves the Observations
getPsi.NPVI: Returns Current Estimator
learnDevG: Estimation of Cond. Expect. of ((X==0)-gW)*effIC1 Given W
learnDevTheta: Estimation of Cond. Expect. of (Y-thetaXW)^2 Given (X,W)
superLearningLib: superLearningLib
tcga2012brca: Sample breast cancer data from TCGA
See all...

All man pages Function index File listing

Man pages

as.character.NPVI: Returns a Description
extractW: Extracts W Columns from Matrix of Observations
extractXW: Removes the Y Column from Matrix of Observations
getHistory.NPVI: Returns History of TMLE Procedure
getLightFit: Makes Lighter Fitted Object
getObs.NPVI: Retrieves the Observations
getPsi.NPVI: Returns Current Estimator
getPsiSd.NPVI: Returns Current Estimated Standard Deviation of the Estimator
getPValue.matrix: Calculates a p-value from a matrix object of type 'history'
getPValue.NPVI: Calculates a p-value from a NPVI object
getSample: Generates Simulated Data
learnCondExpX2givenW: Estimation of Cond. Expect. of X^2 Given W
learnCondExpXYgivenW: Estimation of Cond. Expect. of XY Given W
learnDevG: Estimation of Cond. Expect. of ((X==0)-gW)*effIC1 Given W
learnDevMu: Estimation of Cond. Expect. of (X-muW)*effIC1 Given W
learnDevTheta: Estimation of Cond. Expect. of (Y-thetaXW)^2 Given (X,W)
learnG: Estimation of Cond. Prob. of X=x_0 Given W
learningLib: learningLib
learnMuAux: Estimation of Cond. Expect. of X Given (X!=x_0, W)
learnTheta: Estimation of Cond. Expect. of Y given (X,W)
predict.SL.glm.condExpX2givenW: SL Wrapper for Estimation of Cond. Expect. of X^2 Given W
predict.SL.glm.condExpXYgivenW: SL Wrapper for Estimation of Cond. Expect. of XY Given W
predict.SL.glm.g: SL Wrapper for Estimation of Cond. Prob. of X=0 Given W
predict.SL.glm.theta: SL Wrapper for Estimation of Cond. Expect. of Y Given (X,W)
setConfLevel.NPVI: Sets Confidence Level
SL.glm.condExpX2givenW: SL Wrapper for Estimation of Cond. Expect. of X^2 Given W
SL.glm.condExpXYgivenW: SL Wrapper for Estimation of Cond. Expect. of XY Given W
SL.glm.g: SL Wrapper for Estimation of Cond. Prob. of X=0 Given W
SL.glm.theta: SL Wrapper for Estimation of Cond. Prob. of X=0 Given W
superLearningLib: superLearningLib
tcga2012brca: Sample breast cancer data from TCGA
tmle.npvi.: Targeted Minimum Loss Estimation of NPVI

Functions

SL.glm.condExpX2givenW Man page Source code
SL.glm.condExpXYgivenW Man page Source code
SL.glm.g Man page Source code
SL.glm.theta Man page Source code
as.character Man page
as.character.NPVI Man page
estimateDevG Source code
estimateDevMu Source code
estimateDevTheta Source code
estimateG Source code
estimateMuAux Source code
estimatePsi Source code
estimateTheta Source code
extract Source code
extractW Man page Source code
extractXW Man page Source code
fasterGetSimulationScheme Source code
getHistory Man page
getHistory.NPVI Man page
getLightFit Man page Source code
getObs Man page
getObs.NPVI Man page
getPValue Man page
getPValue.NPVI Man page
getPValue.matrix Man page
getPsi Man page
getPsi.NPVI Man page
getPsiSd Man page
getPsiSd.NPVI Man page
getSample Man page
getSimulationScheme Source code
identifyUniqueEntries Source code
learnCondExpX2givenW Man page
learnCondExpXYgivenW Man page
learnDevG Man page
learnDevMu Man page
learnDevTheta Man page
learnG Man page
learnMuAux Man page
learnTheta Man page
learningLib Man page
linearInterpolations Source code
partialCorrelation Source code
predict.SL.glm.condExpX2givenW Man page Source code
predict.SL.glm.condExpXYgivenW Man page Source code
predict.SL.glm.g Man page Source code
predict.SL.glm.theta Man page Source code
setConfLevel Man page
setConfLevel.NPVI Man page
simulateData Source code
simulateParsimoniouslyXgivenW Source code
simulateParsimoniouslyYgivenXW Source code
superLearningLib Man page
tcga2012brca Man page
threshold Source code
tmle.npvi Man page Man page Source code
validateArgumentObs Source code

Files

inst
inst/CITATION
inst/NEWS
inst/testScripts
inst/testScripts/tcga2012brca
inst/testScripts/tcga2012brca/03.pValues.R
inst/testScripts/tcga2012brca/03b.plotPartialCorrelations.R
inst/testScripts/tcga2012brca/findGenesIndices.pl
inst/testScripts/tcga2012brca/02.tmle.npvi.R
inst/testScripts/tcga2012brca/01.merge,manyCG.R
inst/testScripts/tcga2012brca/01.1.exportGeneLevelData.R
inst/testScripts/tcga2012brca/04.propZero.R
inst/testScripts/tcga2012brca/00.functions.R
inst/doc
inst/doc/tmle-npvi.Rnw
inst/doc/tmle-npvi.pdf
inst/doc/tmle-npvi.R
inst/system
inst/system/installSuggestedPackages.R
NAMESPACE
data
data/tcga2012brca.rda
data/datalist
data/learningLib.rda
data/superLearningLib.rda
R
R/getSample.R
R/getLightFit.R
R/estimateDevMu.R
R/threshold.R
R/validateArgumentObs.R
R/NPVI.update.R
R/SuperLearning.R
R/tmle.npvi.R
R/simulateParsimoniouslyYgivenXW.R
R/mu.R
R/NPVI.R
R/theta.R
R/g.R
R/estimatePsi.R
R/NPVI.updatePsi.R
R/estimateTheta.R
R/estimateMuAux.R
R/estimateDevG.R
R/estimateDevTheta.R
R/estimateG.R
R/extract.R
R/simulateData.R
R/pcor.R
R/simulateParsimoniouslyXgivenW.R
R/NPVI.init.R
vignettes
vignettes/tmle-npvi.Rnw
MD5
build
build/vignette.rds
DESCRIPTION
man
man/learnDevMu.Rd
man/tcga2012brca.Rd
man/getPsiSd.NPVI.Rd
man/SL.glm.condExpX2givenW.Rd
man/as.character.NPVI.Rd
man/SL.glm.condExpXYgivenW.Rd
man/getLightFit.Rd
man/predict.SL.glm.condExpXYgivenW.Rd
man/setConfLevel.NPVI.Rd
man/learnTheta.Rd
man/getObs.NPVI.Rd
man/learnDevG.Rd
man/getSample.Rd
man/getHistory.NPVI.Rd
man/extractXW.Rd
man/getPsi.NPVI.Rd
man/predict.SL.glm.condExpX2givenW.Rd
man/SL.glm.theta.Rd
man/predict.SL.glm.theta.Rd
man/extractW.Rd
man/predict.SL.glm.g.Rd
man/learnG.Rd
man/superLearningLib.Rd
man/learnDevTheta.Rd
man/getPValue.NPVI.Rd
man/tmle.npvi..Rd
man/learnCondExpX2givenW.Rd
man/learnCondExpXYgivenW.Rd
man/getPValue.matrix.Rd
man/SL.glm.g.Rd
man/learningLib.Rd
man/learnMuAux.Rd
tmle.npvi documentation built on May 19, 2017, 7:11 a.m.