tmle.npvi: Targeted Learning of a NP Importance of a Continuous Exposure

Targeted minimum loss estimation (TMLE) of a non-parametric variable importance measure of a continuous exposure 'X' on an outcome 'Y', taking baseline covariates 'W' into account.

Author
Antoine Chambaz, Pierre Neuvial
Date of publication
2015-05-22 18:59:02
Maintainer
Pierre Neuvial <pierre.neuvial@genopole.cnrs.fr>
License
GPL
Version
0.10.0

View on CRAN

Man pages

as.character.NPVI
Returns a Description
extractW
Extracts W Columns from Matrix of Observations
extractXW
Removes the Y Column from Matrix of Observations
getHistory.NPVI
Returns History of TMLE Procedure
getLightFit
Makes Lighter Fitted Object
getObs.NPVI
Retrieves the Observations
getPsi.NPVI
Returns Current Estimator
getPsiSd.NPVI
Returns Current Estimated Standard Deviation of the Estimator
getPValue.matrix
Calculates a p-value from a matrix object of type 'history'
getPValue.NPVI
Calculates a p-value from a NPVI object
getSample
Generates Simulated Data
learnCondExpX2givenW
Estimation of Cond. Expect. of X^2 Given W
learnCondExpXYgivenW
Estimation of Cond. Expect. of XY Given W
learnDevG
Estimation of Cond. Expect. of ((X==0)-gW)*effIC1 Given W
learnDevMu
Estimation of Cond. Expect. of (X-muW)*effIC1 Given W
learnDevTheta
Estimation of Cond. Expect. of (Y-thetaXW)^2 Given (X,W)
learnG
Estimation of Cond. Prob. of X=x_0 Given W
learningLib
learningLib
learnMuAux
Estimation of Cond. Expect. of X Given (X!=x_0, W)
learnTheta
Estimation of Cond. Expect. of Y given (X,W)
predict.SL.glm.condExpX2givenW
SL Wrapper for Estimation of Cond. Expect. of X^2 Given W
predict.SL.glm.condExpXYgivenW
SL Wrapper for Estimation of Cond. Expect. of XY Given W
predict.SL.glm.g
SL Wrapper for Estimation of Cond. Prob. of X=0 Given W
predict.SL.glm.theta
SL Wrapper for Estimation of Cond. Expect. of Y Given (X,W)
setConfLevel.NPVI
Sets Confidence Level
SL.glm.condExpX2givenW
SL Wrapper for Estimation of Cond. Expect. of X^2 Given W
SL.glm.condExpXYgivenW
SL Wrapper for Estimation of Cond. Expect. of XY Given W
SL.glm.g
SL Wrapper for Estimation of Cond. Prob. of X=0 Given W
SL.glm.theta
SL Wrapper for Estimation of Cond. Prob. of X=0 Given W
superLearningLib
superLearningLib
tcga2012brca
Sample breast cancer data from TCGA
tmle.npvi.
Targeted Minimum Loss Estimation of NPVI

Files in this package

tmle.npvi
tmle.npvi/inst
tmle.npvi/inst/CITATION
tmle.npvi/inst/NEWS
tmle.npvi/inst/testScripts
tmle.npvi/inst/testScripts/tcga2012brca
tmle.npvi/inst/testScripts/tcga2012brca/03.pValues.R
tmle.npvi/inst/testScripts/tcga2012brca/03b.plotPartialCorrelations.R
tmle.npvi/inst/testScripts/tcga2012brca/findGenesIndices.pl
tmle.npvi/inst/testScripts/tcga2012brca/02.tmle.npvi.R
tmle.npvi/inst/testScripts/tcga2012brca/01.merge,manyCG.R
tmle.npvi/inst/testScripts/tcga2012brca/01.1.exportGeneLevelData.R
tmle.npvi/inst/testScripts/tcga2012brca/04.propZero.R
tmle.npvi/inst/testScripts/tcga2012brca/00.functions.R
tmle.npvi/inst/doc
tmle.npvi/inst/doc/tmle-npvi.Rnw
tmle.npvi/inst/doc/tmle-npvi.pdf
tmle.npvi/inst/doc/tmle-npvi.R
tmle.npvi/inst/system
tmle.npvi/inst/system/installSuggestedPackages.R
tmle.npvi/NAMESPACE
tmle.npvi/data
tmle.npvi/data/tcga2012brca.rda
tmle.npvi/data/datalist
tmle.npvi/data/learningLib.rda
tmle.npvi/data/superLearningLib.rda
tmle.npvi/R
tmle.npvi/R/getSample.R
tmle.npvi/R/getLightFit.R
tmle.npvi/R/estimateDevMu.R
tmle.npvi/R/threshold.R
tmle.npvi/R/validateArgumentObs.R
tmle.npvi/R/NPVI.update.R
tmle.npvi/R/SuperLearning.R
tmle.npvi/R/tmle.npvi.R
tmle.npvi/R/simulateParsimoniouslyYgivenXW.R
tmle.npvi/R/mu.R
tmle.npvi/R/NPVI.R
tmle.npvi/R/theta.R
tmle.npvi/R/g.R
tmle.npvi/R/estimatePsi.R
tmle.npvi/R/NPVI.updatePsi.R
tmle.npvi/R/estimateTheta.R
tmle.npvi/R/estimateMuAux.R
tmle.npvi/R/estimateDevG.R
tmle.npvi/R/estimateDevTheta.R
tmle.npvi/R/estimateG.R
tmle.npvi/R/extract.R
tmle.npvi/R/simulateData.R
tmle.npvi/R/pcor.R
tmle.npvi/R/simulateParsimoniouslyXgivenW.R
tmle.npvi/R/NPVI.init.R
tmle.npvi/vignettes
tmle.npvi/vignettes/tmle-npvi.Rnw
tmle.npvi/MD5
tmle.npvi/build
tmle.npvi/build/vignette.rds
tmle.npvi/DESCRIPTION
tmle.npvi/man
tmle.npvi/man/learnDevMu.Rd
tmle.npvi/man/tcga2012brca.Rd
tmle.npvi/man/getPsiSd.NPVI.Rd
tmle.npvi/man/SL.glm.condExpX2givenW.Rd
tmle.npvi/man/as.character.NPVI.Rd
tmle.npvi/man/SL.glm.condExpXYgivenW.Rd
tmle.npvi/man/getLightFit.Rd
tmle.npvi/man/predict.SL.glm.condExpXYgivenW.Rd
tmle.npvi/man/setConfLevel.NPVI.Rd
tmle.npvi/man/learnTheta.Rd
tmle.npvi/man/getObs.NPVI.Rd
tmle.npvi/man/learnDevG.Rd
tmle.npvi/man/getSample.Rd
tmle.npvi/man/getHistory.NPVI.Rd
tmle.npvi/man/extractXW.Rd
tmle.npvi/man/getPsi.NPVI.Rd
tmle.npvi/man/predict.SL.glm.condExpX2givenW.Rd
tmle.npvi/man/SL.glm.theta.Rd
tmle.npvi/man/predict.SL.glm.theta.Rd
tmle.npvi/man/extractW.Rd
tmle.npvi/man/predict.SL.glm.g.Rd
tmle.npvi/man/learnG.Rd
tmle.npvi/man/superLearningLib.Rd
tmle.npvi/man/learnDevTheta.Rd
tmle.npvi/man/getPValue.NPVI.Rd
tmle.npvi/man/tmle.npvi..Rd
tmle.npvi/man/learnCondExpX2givenW.Rd
tmle.npvi/man/learnCondExpXYgivenW.Rd
tmle.npvi/man/getPValue.matrix.Rd
tmle.npvi/man/SL.glm.g.Rd
tmle.npvi/man/learningLib.Rd
tmle.npvi/man/learnMuAux.Rd