tmle.npvi: Targeted Learning of a NP Importance of a Continuous Exposure

Targeted minimum loss estimation (TMLE) of a non-parametric variable importance measure of a continuous exposure 'X' on an outcome 'Y', taking baseline covariates 'W' into account.

AuthorAntoine Chambaz, Pierre Neuvial
Date of publication2015-05-22 18:59:02
MaintainerPierre Neuvial <pierre.neuvial@genopole.cnrs.fr>
LicenseGPL
Version0.10.0

View on CRAN

Man pages

as.character.NPVI: Returns a Description

extractW: Extracts W Columns from Matrix of Observations

extractXW: Removes the Y Column from Matrix of Observations

getHistory.NPVI: Returns History of TMLE Procedure

getLightFit: Makes Lighter Fitted Object

getObs.NPVI: Retrieves the Observations

getPsi.NPVI: Returns Current Estimator

getPsiSd.NPVI: Returns Current Estimated Standard Deviation of the Estimator

getPValue.matrix: Calculates a p-value from a matrix object of type 'history'

getPValue.NPVI: Calculates a p-value from a NPVI object

getSample: Generates Simulated Data

learnCondExpX2givenW: Estimation of Cond. Expect. of X^2 Given W

learnCondExpXYgivenW: Estimation of Cond. Expect. of XY Given W

learnDevG: Estimation of Cond. Expect. of ((X==0)-gW)*effIC1 Given W

learnDevMu: Estimation of Cond. Expect. of (X-muW)*effIC1 Given W

learnDevTheta: Estimation of Cond. Expect. of (Y-thetaXW)^2 Given (X,W)

learnG: Estimation of Cond. Prob. of X=x_0 Given W

learningLib: learningLib

learnMuAux: Estimation of Cond. Expect. of X Given (X!=x_0, W)

learnTheta: Estimation of Cond. Expect. of Y given (X,W)

predict.SL.glm.condExpX2givenW: SL Wrapper for Estimation of Cond. Expect. of X^2 Given W

predict.SL.glm.condExpXYgivenW: SL Wrapper for Estimation of Cond. Expect. of XY Given W

predict.SL.glm.g: SL Wrapper for Estimation of Cond. Prob. of X=0 Given W

predict.SL.glm.theta: SL Wrapper for Estimation of Cond. Expect. of Y Given (X,W)

setConfLevel.NPVI: Sets Confidence Level

SL.glm.condExpX2givenW: SL Wrapper for Estimation of Cond. Expect. of X^2 Given W

SL.glm.condExpXYgivenW: SL Wrapper for Estimation of Cond. Expect. of XY Given W

SL.glm.g: SL Wrapper for Estimation of Cond. Prob. of X=0 Given W

SL.glm.theta: SL Wrapper for Estimation of Cond. Prob. of X=0 Given W

superLearningLib: superLearningLib

tcga2012brca: Sample breast cancer data from TCGA

tmle.npvi.: Targeted Minimum Loss Estimation of NPVI

Files in this package

tmle.npvi
tmle.npvi/inst
tmle.npvi/inst/CITATION
tmle.npvi/inst/NEWS
tmle.npvi/inst/testScripts
tmle.npvi/inst/testScripts/tcga2012brca
tmle.npvi/inst/testScripts/tcga2012brca/03.pValues.R
tmle.npvi/inst/testScripts/tcga2012brca/03b.plotPartialCorrelations.R
tmle.npvi/inst/testScripts/tcga2012brca/findGenesIndices.pl
tmle.npvi/inst/testScripts/tcga2012brca/02.tmle.npvi.R
tmle.npvi/inst/testScripts/tcga2012brca/01.merge,manyCG.R
tmle.npvi/inst/testScripts/tcga2012brca/01.1.exportGeneLevelData.R
tmle.npvi/inst/testScripts/tcga2012brca/04.propZero.R
tmle.npvi/inst/testScripts/tcga2012brca/00.functions.R
tmle.npvi/inst/doc
tmle.npvi/inst/doc/tmle-npvi.Rnw
tmle.npvi/inst/doc/tmle-npvi.pdf
tmle.npvi/inst/doc/tmle-npvi.R
tmle.npvi/inst/system
tmle.npvi/inst/system/installSuggestedPackages.R
tmle.npvi/NAMESPACE
tmle.npvi/data
tmle.npvi/data/tcga2012brca.rda
tmle.npvi/data/datalist
tmle.npvi/data/learningLib.rda
tmle.npvi/data/superLearningLib.rda
tmle.npvi/R
tmle.npvi/R/getSample.R tmle.npvi/R/getLightFit.R tmle.npvi/R/estimateDevMu.R tmle.npvi/R/threshold.R tmle.npvi/R/validateArgumentObs.R tmle.npvi/R/NPVI.update.R tmle.npvi/R/SuperLearning.R tmle.npvi/R/tmle.npvi.R tmle.npvi/R/simulateParsimoniouslyYgivenXW.R tmle.npvi/R/mu.R tmle.npvi/R/NPVI.R tmle.npvi/R/theta.R tmle.npvi/R/g.R tmle.npvi/R/estimatePsi.R tmle.npvi/R/NPVI.updatePsi.R tmle.npvi/R/estimateTheta.R tmle.npvi/R/estimateMuAux.R tmle.npvi/R/estimateDevG.R tmle.npvi/R/estimateDevTheta.R tmle.npvi/R/estimateG.R tmle.npvi/R/extract.R tmle.npvi/R/simulateData.R tmle.npvi/R/pcor.R tmle.npvi/R/simulateParsimoniouslyXgivenW.R tmle.npvi/R/NPVI.init.R
tmle.npvi/vignettes
tmle.npvi/vignettes/tmle-npvi.Rnw
tmle.npvi/MD5
tmle.npvi/build
tmle.npvi/build/vignette.rds
tmle.npvi/DESCRIPTION
tmle.npvi/man
tmle.npvi/man/learnDevMu.Rd tmle.npvi/man/tcga2012brca.Rd tmle.npvi/man/getPsiSd.NPVI.Rd tmle.npvi/man/SL.glm.condExpX2givenW.Rd tmle.npvi/man/as.character.NPVI.Rd tmle.npvi/man/SL.glm.condExpXYgivenW.Rd tmle.npvi/man/getLightFit.Rd tmle.npvi/man/predict.SL.glm.condExpXYgivenW.Rd tmle.npvi/man/setConfLevel.NPVI.Rd tmle.npvi/man/learnTheta.Rd tmle.npvi/man/getObs.NPVI.Rd tmle.npvi/man/learnDevG.Rd tmle.npvi/man/getSample.Rd tmle.npvi/man/getHistory.NPVI.Rd tmle.npvi/man/extractXW.Rd tmle.npvi/man/getPsi.NPVI.Rd tmle.npvi/man/predict.SL.glm.condExpX2givenW.Rd tmle.npvi/man/SL.glm.theta.Rd tmle.npvi/man/predict.SL.glm.theta.Rd tmle.npvi/man/extractW.Rd tmle.npvi/man/predict.SL.glm.g.Rd tmle.npvi/man/learnG.Rd tmle.npvi/man/superLearningLib.Rd tmle.npvi/man/learnDevTheta.Rd tmle.npvi/man/getPValue.NPVI.Rd tmle.npvi/man/tmle.npvi..Rd tmle.npvi/man/learnCondExpX2givenW.Rd tmle.npvi/man/learnCondExpXYgivenW.Rd tmle.npvi/man/getPValue.matrix.Rd tmle.npvi/man/SL.glm.g.Rd tmle.npvi/man/learningLib.Rd tmle.npvi/man/learnMuAux.Rd

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