toxbootQueryToxCast: Query ToxCast and format data to pass to 'toxboot'
In toxboot: Bootstrap Methods for 'ToxCast' High Throughput Screening Data
Description
Usage
Arguments
Details
Value
View source: R/toxbootQueryToxCast.R
Description
toxbootQueryToxCast passes .
Usage
1
toxbootQueryToxCast(aeids)
Arguments
aeids
integer vector contains which aeids to query. Values will be
passed to tcplLoadData.
Details
Because bmad is calculated for all chemicals in the assay,
the entire aeid must be queried. After calculation of bmad chemicals
can be further subset prior to running toxboot.
The assumption is that tcplConf has been setup to pull data
from the correct database.
Value
dat, a data.table corresponding to the level 3 data for the aeids
with columns added for m4id and bmad.
toxboot documentation built on Nov. 26, 2018, 1:04 a.m.
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Description Usage Arguments Details Value
View source: R/toxbootQueryToxCast.R
Description
toxbootQueryToxCast passes .
Usage
1 | toxbootQueryToxCast(aeids)
|
Arguments
aeids |
integer vector contains which aeids to query. Values will be passed to tcplLoadData. |
Details
Because bmad is calculated for all chemicals in the assay,
the entire aeid must be queried. After calculation of bmad chemicals
can be further subset prior to running toxboot.
The assumption is that tcplConf has been setup to pull data
from the correct database.
Value
dat, a data.table corresponding to the level 3 data for the aeids
with columns added for m4id and bmad.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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