normalize_single_assay: normalize per plate (from single assay data)
In toxplot: Batch Processing, Modeling and Visualizing the Dose-Response of High-Throughput Screening Bioassay
Description
Usage
Arguments
Value
View source: R/normalization.R
Description
normalize raw readings as percent of median/mean vehicle control wells, per assay, per plate.
This function is called by normalize_per_plate, should not be called directly by user.
#'
Usage
1
normalize_single_assay(dt, nctrl)
Arguments
dt
data.frame contains essential columns with the raw data.
nctrl
the name (spid) of the vehicle/solvent control used for calculation
Value
data.frame with normalized value columns. 'nval_mean' column is the normalized value
calculated using the mean of vehicle control wells, 'nval_median' column is the normalized value
calculated using the median of vehicle control wells.
toxplot documentation built on April 3, 2018, 9:04 a.m.
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Description Usage Arguments Value
View source: R/normalization.R
Description
normalize raw readings as percent of median/mean vehicle control wells, per assay, per plate. This function is called by normalize_per_plate, should not be called directly by user. #'
Usage
1 | normalize_single_assay(dt, nctrl)
|
Arguments
dt |
data.frame contains essential columns with the raw data. |
nctrl |
the name (spid) of the vehicle/solvent control used for calculation |
Value
data.frame with normalized value columns. 'nval_mean' column is the normalized value calculated using the mean of vehicle control wells, 'nval_median' column is the normalized value calculated using the median of vehicle control wells.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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