tripSplit: Split tracking data into trips

In track2KBA: Identifying Important Areas from Animal Tracking Data

Split tracking data into trips

Description

tripSplit employs splitSingleID to split data from multiple individuals' into discrete trips made from centrally-located places.

Usage

tripSplit(
  dataGroup,
  colony,
  innerBuff = NULL,
  returnBuff = NULL,
  duration = NULL,
  gapLimit = NULL,
  nests = FALSE,
  rmNonTrip = FALSE,
  verbose = TRUE
)

splitSingleID(
  Track,
  colony,
  innerBuff = 15,
  returnBuff = 45,
  duration = 12,
  gapLimit = gapLimit,
  nests = FALSE,
  verbose = verbose
)

Arguments

dataGroup	data.frame. Must contain 'Latitude', 'Longitude', 'ID' and 'DateTime' columns (correct format may be assured using formatFields function).
colony	data.frame. Containing 'Latitude' and 'Longitude' fields specifying the central location(s) from which trips begin. If data are from MoveBank this information may be extracted using the move2KBA function. If nests=TRUE, each row should correspond to an appropriate location (Lat/Lon) for each ID value in dataGroup.
innerBuff	numeric (in kilometers). Indicate the distance that an animal must travel for the movement to be considered a trip. Note that this is also the metric that determines whether two subsequent trips are split - if your animal records locations > innerBuff (km) from its place of origin and no locations at the place of origin (e.g. for burrow-nesting species) then subsequent trips may be lumped into a single trip. Increase innerBuff to ensure correct splitting of trips.
returnBuff	numeric (in kilometers). Indicate the proximity required for a trip to be considered as returning. This is useful for identifying incomplete trips (i.e. where storage/transmission failed during the trip).
duration	numeric (in hours). The period of time that the animals must be at large for the movement to be considered a trip.
gapLimit	numeric (in days). The period of time between points to be considered too large to be a contiguous tracking event. Can be used to ensure that deployments on the same animal in different years do not get combined into extra long trips. Defaults to one year.
nests	logical scalar (TRUE/FALSE). Should the central place used in trip-splitting be specific to each ID? If so, each place must be matched with an 'ID' value in both dataGroup and colony objects.
rmNonTrip	logical scalar (TRUE/FALSE). Should periods not associated with trips be filtered out? Note that this does not filter out the trip start and end points which fall within innerBuff. Defaults to FALSE.
verbose	logical scalar (TRUE/FALSE). Should the function print messages when trips start outside the innerBuffer or doesn't return to the 'colony'? Default is TRUE. tripSummary. Default is TRUE.
Track	dataFrame.

Details

This function splits central place foraging animal movement data into individual trips away from a central location based on distance and time.

nests=TRUE may be used if it is desired, for example, to use specific nest locations instead of one central location for all individuals/dataGroup.

Value

Returns an un-projected (WGS84) SpatialPointsDataFrame, with the field 'tripID' added to identify each unique trip-ID combination. If rmNonTrip=TRUE, then output has been filtered of points deemed not associated with trip movements.

See Also

tripSummary, mapTrips

Examples

## make some play data
dataGroup <- data.frame(Longitude = rep(c(1:10, 10:1), 2), 
                        Latitude =  rep(c(1:10, 10:1), 2),
                        ID = c(rep("A", 20), rep("B", 20)),
                        DateTime = format(
                        lubridate::ymd_hms("2021-01-01 00:00:00") +
                        lubridate::hours(0:19))
)
colony <- data.frame(
 Longitude = dataGroup$Longitude[1], Latitude = dataGroup$Latitude[1]
)
## split tracks into trips
Trips <- tripSplit(dataGroup,
                   colony=colony,
                   innerBuff=2,
                   returnBuff=20,
                   duration=1,
                   nests = FALSE,
                   rmNonTrip = TRUE
)
                   

track2KBA documentation built on Sept. 27, 2023, 5:08 p.m.