maxDepth: Calculation of the maximum depth of the tree

In treebalance: Computation of Tree (Im)Balance Indices

Calculation of the maximum depth of the tree

Description

This function calculates the maximum depth of any vertex in a rooted tree T, which is at the same time its height h(T). The tree must not necessarily be binary. Formally, h(T) is defined as

h(T)=\max_{v\in V(T)} \delta(v)

with \delta(v) being the depth of the vertex v. The maximum depth is an imbalance index.

For n=1 the function returns h(T)=0 and a warning.

For details on the maximum depth, see also Chapter 23 in "Tree balance indices: a comprehensive survey" (https://doi.org/10.1007/978-3-031-39800-1_23).

Usage

maxDepth(tree)

Arguments

tree	A rooted tree in phylo format.

Value

maxDepth returns the maximum depth, i.e. height, of a tree.

Author(s)

Luise Kuehn, Sophie Kersting

References

C. Colijn and J. Gardy. Phylogenetic tree shapes resolve disease transmission patterns. Evolution, Medicine, and Public Health, 2014(1):96-108, 2014. ISSN 2050-6201. doi: 10.1093/emph/eou018.

Examples

tree <- ape::read.tree(text="((((,),),(,)),(((,),),(,)));")
maxDepth(tree)
tree <- ape::read.tree(text="((,),((((,),),),(,)));")
maxDepth(tree)

treebalance documentation built on May 29, 2024, 1:15 a.m.