treebase: Discovery, Access and Manipulation of 'TreeBASE' Phylogenies

Interface to the API for 'TreeBASE' (http://treebase.org) from 'R.' 'TreeBASE' is a repository of user-submitted phylogenetic trees (of species, population, or genes) and the data used to create them.

AuthorCarl Boettiger [aut, cre], Duncan Temple Lang [aut]
Date of publication2016-09-05 08:26:58
MaintainerCarl Boettiger <cboettig@gmail.com>
LicenseCC0
Version0.1.3
https://github.com/ropensci/treebase

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Files in this package

treebase
treebase/inst
treebase/inst/doc
treebase/inst/doc/vignette.Rmd
treebase/inst/doc/vignette.R
treebase/inst/doc/html
treebase/inst/doc/html/get_nex.html
treebase/inst/doc/html/cache_treebase.html
treebase/inst/doc/html/index.html
treebase/inst/doc/html/get_study_id.html
treebase/inst/doc/html/search_treebase.html
treebase/inst/doc/html/dryad_metadata.html
treebase/inst/doc/html/metadata_from_oai.html
treebase/inst/doc/html/img
treebase/inst/doc/html/img/glyphicons-halflings-white.png
treebase/inst/doc/html/img/glyphicons-halflings.png
treebase/inst/doc/html/phylo_metadata.html
treebase/inst/doc/html/css
treebase/inst/doc/html/css/bootstrap.css
treebase/inst/doc/html/css/bootstrap.min.css
treebase/inst/doc/html/css/bootstrap-responsive.css
treebase/inst/doc/html/css/bootstrap-responsive.min.css
treebase/inst/doc/html/css/highlight.css
treebase/inst/doc/html/clean_data.html
treebase/inst/doc/html/drop_nonascii.html
treebase/inst/doc/html/search_metadata.html
treebase/inst/doc/html/have_branchlength.html
treebase/inst/doc/html/get_study.html
treebase/inst/doc/html/metadata.html
treebase/inst/doc/html/oai_metadata.html
treebase/inst/doc/html/treebase.html
treebase/inst/doc/html/show_metadata.html
treebase/inst/doc/html/js
treebase/inst/doc/html/js/bootstrap.js
treebase/inst/doc/html/js/bootstrap.min.js
treebase/inst/doc/html/drop_nontrees.html
treebase/inst/doc/vignette.html
treebase/tests
treebase/tests/testthat
treebase/tests/testthat/test_metadata.R
treebase/tests/testthat/test_treebase.R
treebase/tests/testthat/test_basic.R
treebase/tests/test-all.R
treebase/NAMESPACE
treebase/NEWS
treebase/data
treebase/data/treebase.rda
treebase/data/metadata.rda
treebase/data/datalist
treebase/R
treebase/R/download_metadata.R treebase/R/data.R treebase/R/metadata.R treebase/R/cache_treebase.R treebase/R/clean_metadata.R treebase/R/treebase.R
treebase/vignettes
treebase/vignettes/vignette.md
treebase/vignettes/vignette.Rmd
treebase/README.md
treebase/MD5
treebase/build
treebase/build/vignette.rds
treebase/DESCRIPTION
treebase/man
treebase/man/phylo_metadata.Rd treebase/man/drop_nontrees.Rd treebase/man/metadata.Rd treebase/man/clean_data.Rd treebase/man/show_metadata.Rd treebase/man/metadata_from_oai.Rd treebase/man/cache_treebase.Rd treebase/man/search_treebase.Rd treebase/man/drop_nonascii.Rd treebase/man/get_study_id.Rd treebase/man/oai_metadata.Rd treebase/man/download_metadata.Rd treebase/man/get_study.Rd treebase/man/get_nex.Rd treebase/man/have_branchlength.Rd treebase/man/dryad_metadata.Rd treebase/man/treebase.Rd
treebase/.Rinstignore

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