treebase: Discovery, Access and Manipulation of 'TreeBASE' Phylogenies

Interface to the API for 'TreeBASE' <http://treebase.org> from 'R.' 'TreeBASE' is a repository of user-submitted phylogenetic trees (of species, population, or genes) and the data used to create them.

Install the latest version of this package by entering the following in R:
install.packages("treebase")
AuthorCarl Boettiger [aut, cre], Duncan Temple Lang [aut]
Date of publication2017-02-06 22:00:51
MaintainerCarl Boettiger <cboettig@gmail.com>
LicenseCC0
Version0.1.4
https://github.com/ropensci/treebase

View on CRAN

Files

inst
inst/doc
inst/doc/vignette.Rmd
inst/doc/vignette.R
inst/doc/html
inst/doc/html/get_nex.html
inst/doc/html/cache_treebase.html
inst/doc/html/index.html
inst/doc/html/get_study_id.html
inst/doc/html/search_treebase.html
inst/doc/html/dryad_metadata.html
inst/doc/html/metadata_from_oai.html
inst/doc/html/img
inst/doc/html/img/glyphicons-halflings-white.png
inst/doc/html/img/glyphicons-halflings.png
inst/doc/html/phylo_metadata.html
inst/doc/html/css
inst/doc/html/css/bootstrap.css
inst/doc/html/css/bootstrap.min.css
inst/doc/html/css/bootstrap-responsive.css
inst/doc/html/css/bootstrap-responsive.min.css
inst/doc/html/css/highlight.css
inst/doc/html/clean_data.html
inst/doc/html/drop_nonascii.html
inst/doc/html/search_metadata.html
inst/doc/html/have_branchlength.html
inst/doc/html/get_study.html
inst/doc/html/metadata.html
inst/doc/html/oai_metadata.html
inst/doc/html/treebase.html
inst/doc/html/show_metadata.html
inst/doc/html/js
inst/doc/html/js/bootstrap.js
inst/doc/html/js/bootstrap.min.js
inst/doc/html/drop_nontrees.html
inst/doc/vignette.html
tests
tests/testthat
tests/testthat/test_metadata.R tests/testthat/test_treebase.R tests/testthat/test_basic.R tests/test-all.R
NAMESPACE
NEWS
data
data/treebase.rda
data/metadata.rda
data/datalist
R
R/download_metadata.R R/data.R R/metadata.R R/cache_treebase.R R/clean_metadata.R R/treebase.R
vignettes
vignettes/vignette.md
vignettes/vignette.Rmd
README.md
MD5
build
build/vignette.rds
DESCRIPTION
man
man/phylo_metadata.Rd man/drop_nontrees.Rd man/metadata.Rd man/clean_data.Rd man/show_metadata.Rd man/metadata_from_oai.Rd man/cache_treebase.Rd man/search_treebase.Rd man/drop_nonascii.Rd man/get_study_id.Rd man/oai_metadata.Rd man/download_metadata.Rd man/get_study.Rd man/get_nex.Rd man/have_branchlength.Rd man/dryad_metadata.Rd man/treebase.Rd
.Rinstignore

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