Fast Molecular Clock Dating of Phylogenetic Trees with Rate Variation

boot | Estimate of confidence intervals of molecular clock... |

dater | Estimate a time-scaled tree and fit a molecular clock |

goodnessOfFitPlot | Produce a goodness of fit plot |

outlierLineages | Detect lineages with unusually large evolutionary divergence... |

outlierTips | Detect terminal lineages with unusually large evolutionary... |

parboot | Estimate of confidence intervals using parametric bootstrap... |

plot.bootTreedater | Plots lineages through time and confidence intervals... |

relaxedClockTest | Use parametric bootstrap to test if relaxed clock offers... |

rootToTipRegressionPlot | Plot evolutionary distance from root to sample times and... |

sampleYearsFromLabels | Compute a vector of numeric sample times from labels in a... |

treedater-package | treedater fits a molecular clock to a phylogenetic tree and... |

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