trioGxE: A data smoothing approach to explore and test gene-environment interaction in case-parent trio data
Version 0.1-1

The package contains functions that 1) estimates gene-environment interaction between a SNP and a continuous non-genetic attribute by fitting a generalized additive model to case-parent trio data, 2) produces graphical displays of estimated interaction, 3) performs permutation test of gene-environment interaction; 4) simulates informative case-parent trios.

AuthorJi-Hyung Shin <shin@sfu.ca>, Brad McNeney <mcneney@sfu.ca>, Jinko Graham <jgraham@sfu.ca>
Date of publication2013-04-03 01:39:24
MaintainerJi-Hyung Shin <shin@sfu.ca>
LicenseGPL-2
Version0.1-1
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("trioGxE")

Popular man pages

hypoTrioDat: Simulated data for a hypothetical example
plot.trioGxE: Graphical display of gene-environment interaction between a...
test.trioGxE: Test of gene-environment interaction between a SNP and a...
trioGxE: Generalized additive model estimation of gene-environment...
trioGxE-internal: Internal pirls.trio Functions
trioSim: Simulate informative case-parent trios
See all...

All man pages Function index File listing

Man pages

hypoTrioDat: Simulated data for a hypothetical example
plot.trioGxE: Graphical display of gene-environment interaction between a...
test.trioGxE: Test of gene-environment interaction between a SNP and a...
trioGxE: Generalized additive model estimation of gene-environment...
trioGxE-internal: Internal pirls.trio Functions
trioSim: Simulate informative case-parent trios

Functions

Bmat Man page Source code
Dmat Man page Source code
HptoGp.p Man page Source code
HtoG Man page Source code
HtoGp Man page Source code
Smat Man page Source code
W.sqrt.mat Man page
Xmat Man page Source code
deriv.fcn Man page Source code
hypoTrioDat Man page
link Man page Source code
linkinv Man page Source code
perm.test.stat Source code
plot.pirls.gam Man page Source code
plot.trioGxE Man page Source code
pre.pirls Man page
pre.trioGxE Source code
samD Man page Source code
samE Man page Source code
samHfromHp Man page Source code
samHp Man page Source code
smooth.ci Man page Source code
test.stat Source code
test.trioGxE Man page Source code
trio.Smat Man page Source code
trio.Smat.mul Man page Source code
trio.Xmat Man page Source code
trio.Xmat.mul Man page Source code
trio.mustart Man page Source code
trioGxE Man page Source code
trioSim Man page Source code
triogam.fit Man page
triogam.fit.update Man page
triogam.loglkhd Man page Source code
trioplot Man page Source code
tsbatch Man page Source code
weight.inv.weight Man page

Files

MD5
R
R/trioSim.R
R/trioplot_mgcv.R
R/trioGxE_fcns.R
R/trioGxE.R
R/test.trioGxE.R
R/plot.trioGxE.R
R/CubicSplineBasisFuncs.R
NAMESPACE
man
man/trioSim.Rd
man/trioGxE.Rd
man/trioGxE-internal.Rd
man/test.trioGxE.Rd
man/plot.trioGxE.Rd
man/hypoTrioDat.Rd
DESCRIPTION
data
data/hypoTrioDat.txt.gz
trioGxE documentation built on May 20, 2017, 5:16 a.m.

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