tripEstimation: Metropolis Sampler and Supporting Functions for Estimating Animal Movement from Archival Tags and Satellite Fixes
Version 0.0-44

Data handling and estimation functions for animal movement estimation from archival or satellite tags. Helper functions are included for making image summaries binned by time interval from Markov Chain Monte Carlo simulations.

Browse man pages Browse package API and functions Browse package files

AuthorMichael D. Sumner [aut, cre], Simon Wotherspoon [ctb]
Date of publication2016-01-31 12:22:31
MaintainerMichael D. Sumner <mdsumner@gmail.com>
LicenseGPL-3
Version0.0-44
URL https://github.com/mdsumner/tripEstimation
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("tripEstimation")

Man pages

as.image.pimg: Convert to image list
astro: Calculations for position of the sun and moon
behav.bin: Bin MCMC chains.
bits: Set and get bits from binary masks.
chain.read: Manage MCMC cache.
elevation: Calculate elevation of astronomical objects
get.mask: Create, access and manipulate spatial masks
get.sst: Read SST data from online service.
initialize.x: Diagnose and initialize light level estimation.
julday: Julian day and Julian century calculations from date-time...
metropolis: Metropolis-Hastings sampler for location estimation for...
mkCalibration: Create calibration of solar elevation to measured light...
mkLookup: Create a lookup function to query locations against spatial...
norm.proposal: Manage proposal functions tune variance for metropolis...
old.metropolis: Older versions of solar location estimation
pick: Choose twilight segments interactively from light data.
pimg.list: Create a collection of probability images, for MCMC binning.
satellite.model: Function to create a satellite model object for metropolis...
solar: Calculate solar postion parameters
solar.model: Function to create a solar model object for metropolis...

Functions

EQUHOR Man page
FRAC Man page
LMST Man page
MJD Man page
POLAR Man page
as.image.pimg Man page
as.local.pimg Man page
as.matrix.pimg Man page
astro Man page
behav.bin Man page
bin.pimg Man page
bits Man page
bits<- Man page
bmvnorm.proposal Man page
chain.dim Man page
chain.read Man page
chain.write Man page
chunk.bin Man page
combine Man page
coords.pimg Man page
elevation Man page
get.mask Man page
get.pimgs Man page Source code
get.sst Man page Source code
initialize.x Man page
julcent Man page
julday Man page
k.prior Man page Source code
light.quantile Man page
lunar Man page
metropolis Man page
metropolis0 Man page
mini.sun Man page
mkCalibration Man page
mkElevationSeg Man page
mkLookup Man page
mkMaskObject Man page
mkNLPosterior Man page
mkSmall Man page
mvnorm.proposal Man page
norm.proposal Man page
old.dist.gc Man page
old.find.init Man page
old.metropolis Man page
old.mkLookup Man page
onAttach Source code
pick Man page Source code
picksegs Man page Source code
pimg Man page
pimg.list Man page
position.logp Man page
satellite.model Man page
set.mask<- Man page
show.segment Man page
solar Man page
solar.model Man page
unzipper Man page

Files

TODO
inst
inst/CITATION
NAMESPACE
NEWS
R
R/picksegs.R
R/elevation.R
R/norm.proposal.R
R/solar.R
R/combine.R
R/initialize.x.R
R/solar.model.R
R/bits.R
R/mvnorm.proposal.R
R/julday.R
R/as.local.pimg.R
R/get.pimgs.R
R/mkLookup.R
R/as.image.pimg.R
R/pimg.R
R/metropolis.R
R/bmvnorm.proposal.R
R/get.sst.R
R/mkCalibration.R
R/chunk.bin.R
R/satellite.model.R
R/chain.dim.R
R/unzipper.R
R/zzz.r
R/astro.R
R/as.matrix.pimg.R
R/chain.read.R
R/get.mask.R
R/pimg.list.R
R/metropolis0.R
R/behav.bin.R
R/old.metropolis.R
R/chain.write.R
R/coords.pimg.R
R/bin.pimg.R
R/mkSmall.R
README.md
MD5
DESCRIPTION
man
man/julday.Rd
man/get.mask.Rd
man/behav.bin.Rd
man/solar.Rd
man/old.metropolis.Rd
man/chain.read.Rd
man/mkCalibration.Rd
man/as.image.pimg.Rd
man/elevation.Rd
man/norm.proposal.Rd
man/solar.model.Rd
man/satellite.model.Rd
man/bits.Rd
man/initialize.x.Rd
man/get.sst.Rd
man/astro.Rd
man/pick.Rd
man/mkLookup.Rd
man/metropolis.Rd
man/pimg.list.Rd
tripEstimation documentation built on May 19, 2017, 9:36 p.m.