tripEstimation: Metropolis Sampler and Supporting Functions for Estimating Animal Movement from Archival Tags and Satellite Fixes

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Data handling and estimation functions for animal movement estimation from archival or satellite tags. Helper functions are included for making image summaries binned by time interval from Markov Chain Monte Carlo simulations.

Author
Michael D. Sumner [aut, cre], Simon Wotherspoon [ctb]
Date of publication
2016-01-31 12:22:31
Maintainer
Michael D. Sumner <mdsumner@gmail.com>
License
GPL-3
Version
0.0-44
URLs

View on CRAN

Man pages

as.image.pimg
Convert to image list
astro
Calculations for position of the sun and moon
behav.bin
Bin MCMC chains.
bits
Set and get bits from binary masks.
chain.read
Manage MCMC cache.
elevation
Calculate elevation of astronomical objects
get.mask
Create, access and manipulate spatial masks
get.sst
Read SST data from online service.
initialize.x
Diagnose and initialize light level estimation.
julday
Julian day and Julian century calculations from date-time...
metropolis
Metropolis-Hastings sampler for location estimation for...
mkCalibration
Create calibration of solar elevation to measured light...
mkLookup
Create a lookup function to query locations against spatial...
norm.proposal
Manage proposal functions tune variance for metropolis...
old.metropolis
Older versions of solar location estimation
pick
Choose twilight segments interactively from light data.
pimg.list
Create a collection of probability images, for MCMC binning.
satellite.model
Function to create a satellite model object for metropolis...
solar
Calculate solar postion parameters
solar.model
Function to create a solar model object for metropolis...

Files in this package

tripEstimation
tripEstimation/TODO
tripEstimation/inst
tripEstimation/inst/CITATION
tripEstimation/NAMESPACE
tripEstimation/NEWS
tripEstimation/R
tripEstimation/R/picksegs.R
tripEstimation/R/elevation.R
tripEstimation/R/norm.proposal.R
tripEstimation/R/solar.R
tripEstimation/R/combine.R
tripEstimation/R/initialize.x.R
tripEstimation/R/solar.model.R
tripEstimation/R/bits.R
tripEstimation/R/mvnorm.proposal.R
tripEstimation/R/julday.R
tripEstimation/R/as.local.pimg.R
tripEstimation/R/get.pimgs.R
tripEstimation/R/mkLookup.R
tripEstimation/R/as.image.pimg.R
tripEstimation/R/pimg.R
tripEstimation/R/metropolis.R
tripEstimation/R/bmvnorm.proposal.R
tripEstimation/R/get.sst.R
tripEstimation/R/mkCalibration.R
tripEstimation/R/chunk.bin.R
tripEstimation/R/satellite.model.R
tripEstimation/R/chain.dim.R
tripEstimation/R/unzipper.R
tripEstimation/R/zzz.r
tripEstimation/R/astro.R
tripEstimation/R/as.matrix.pimg.R
tripEstimation/R/chain.read.R
tripEstimation/R/get.mask.R
tripEstimation/R/pimg.list.R
tripEstimation/R/metropolis0.R
tripEstimation/R/behav.bin.R
tripEstimation/R/old.metropolis.R
tripEstimation/R/chain.write.R
tripEstimation/R/coords.pimg.R
tripEstimation/R/bin.pimg.R
tripEstimation/R/mkSmall.R
tripEstimation/README.md
tripEstimation/MD5
tripEstimation/DESCRIPTION
tripEstimation/man
tripEstimation/man/julday.Rd
tripEstimation/man/get.mask.Rd
tripEstimation/man/behav.bin.Rd
tripEstimation/man/solar.Rd
tripEstimation/man/old.metropolis.Rd
tripEstimation/man/chain.read.Rd
tripEstimation/man/mkCalibration.Rd
tripEstimation/man/as.image.pimg.Rd
tripEstimation/man/elevation.Rd
tripEstimation/man/norm.proposal.Rd
tripEstimation/man/solar.model.Rd
tripEstimation/man/satellite.model.Rd
tripEstimation/man/bits.Rd
tripEstimation/man/initialize.x.Rd
tripEstimation/man/get.sst.Rd
tripEstimation/man/astro.Rd
tripEstimation/man/pick.Rd
tripEstimation/man/mkLookup.Rd
tripEstimation/man/metropolis.Rd
tripEstimation/man/pimg.list.Rd