Nothing
test_that("RADICAL [DC] Check",{
X <- coredata(y)
n_comp <- 5
pca_method <- "ML"
ic <- radical(X, components = n_comp, demean = TRUE, pca_cov = pca_method, seed = 100, trace = FALSE)
mu <- ic$mu
X_demeaned <- scale(X, center = mu, scale = FALSE)
C <- (t(X_demeaned) %*% X_demeaned)/dim(X_demeaned)[1]
ed <- eigen(C)
D <- diag(ed$values)
E <- ed$vectors
D <- D[1:n_comp, 1:n_comp]
E <- E[, 1:n_comp]
K <- solve(sqrt(D)) %*% t(E)
L <- E %*% sqrt(D)
Z <- X_demeaned %*% t(K)
W <- t(K) %*% ic$U
S <- X_demeaned %*% W + matrix(1, nrow = nrow(X_demeaned)) %*% matrix(mu, nrow = 1) %*% W
expect_equal(S, ic$S)
})
test_that("RADICAL [DC] Custom Input",{
X <- coredata(y)
n_comp <- 5
pca_method <- "ML"
mu <- colMeans(X)
X_demeaned <- scale(X, center = mu, scale = FALSE)
C <- (t(X_demeaned) %*% X_demeaned)/dim(X_demeaned)[1]
ed <- eigen(C)
D <- diag(ed$values)
E <- ed$vectors
D <- D[1:n_comp, 1:n_comp]
E <- E[, 1:n_comp]
K <- solve(sqrt(D)) %*% t(E)
L <- E %*% sqrt(D)
Z <- X_demeaned %*% t(K)
ic_default <- radical(X, components = n_comp, demean = TRUE, pca_cov = pca_method, seed = 100, trace = FALSE)
ic_custom_1 <- radical(X, components = n_comp, demean = TRUE, pca_cov = pca_method, E = E, D = D, seed = 100, trace = FALSE)
expect_equal(ic_default$S, ic_custom_1$S)
ic_custom_2 <- radical(X, components = n_comp, demean = TRUE, pca_cov = pca_method, Z = Z, K = K, L = L, seed = 100, trace = FALSE)
expect_equal(ic_default$S, ic_custom_2$S)
})
test_that("RADICAL Custom Input",{
X <- coredata(y)[,1:8]
n_comp <- NCOL(X)
pca_method <- "ML"
mu <- colMeans(X)
X_demeaned <- scale(X, center = mu, scale = FALSE)
C <- (t(X_demeaned) %*% X_demeaned)/dim(X_demeaned)[1]
ed <- eigen(C)
D <- diag(ed$values)
E <- ed$vectors
D <- D[1:n_comp, 1:n_comp]
E <- E[, 1:n_comp]
K <- solve(sqrt(D)) %*% t(E)
L <- E %*% sqrt(D)
Z <- X_demeaned %*% t(K)
ic_default <- radical(X, components = n_comp, demean = TRUE, pca_cov = pca_method, seed = 100, trace = FALSE)
ic_custom_1 <- radical(X, components = n_comp, demean = TRUE, pca_cov = pca_method, E = E, D = D, seed = 100, trace = FALSE)
expect_equal(ic_default$S, ic_custom_1$S)
ic_custom_2 <- radical(X, components = n_comp, demean = TRUE, pca_cov = pca_method, Z = Z, K = K, L = L, seed = 100, trace = FALSE)
expect_equal(ic_default$S, ic_custom_2$S)
})
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