API for ume
Ultrahigh-Resolution Mass Spectrometry Data Evaluation for Complex Organic Matter

Global functions
.as_peaklist_from_numeric Man page Source code
.extract_library_version Man page Source code
.f_label Man page Source code
.filter_peaklist_basic Man page Source code
.format_duration Source code
.foverlaps_chunked_lapply Source code
.load_peaklist_file Man page Source code Source code
.msg Man page Source code
.normalize_column_aliases Source code
.palette_builders Man page
.prepare_peaklist_columns Man page Source code
.print_progress Source code
.r_mem_mb Source code
.recover_original_colnames Source code
.ume_schema_peaklist Man page
add_known_mf Man page Source code
add_missing_element_columns Man page Source code
as_peaklist Man page Source code
assign_formulas Man page Source code
calc_data_summary Man page Source code
calc_dbe Man page Source code
calc_eval_params Man page Source code
calc_exact_mass Man page Source code
calc_ideg Man page Source code
calc_iterr Man page
calc_ma Man page Source code
calc_ma_abs Man page Source code
calc_neutral_mass Man page Source code
calc_nm Man page Source code
calc_norm_int Man page Source code
calc_number_assignment Man page Source code
calc_number_occurrence Man page Source code
calc_pielou_evenness Man page
calc_recalibrate_ms Man page Source code
calc_shannon_index Man page
calc_simpson_index Man page
check_formula_library Man page Source code
check_mfd Man page Source code
check_table_schema Man page Source code
classify_files Man page Source code
color.palette Man page Source code
convert_data_table_to_molecular_formulas Man page Source code
convert_molecular_formula_to_data_table Man page Source code
create_custom_formula_library Man page Source code
create_ume_formula_library Man page Source code
download_library Man page
eval_isotopes Man page Source code
export_ume_results Man page Source code
extract_aquisition_params Man page Source code
extract_aquisition_params_from_folder Man page Source code
extract_metadata_from_ufz_files Man page Source code
f_colorz Man page Source code
f_colpal_selection Man page Source code
filter_int Man page Source code
filter_mass_accuracy Man page Source code
filter_mf_data Man page Source code
get_isotope_info Man page Source code
is_official_library Source code
is_ume_library Source code
is_ume_peaklist Man page Source code
known_mf Man page
lib_demo Man page
load_ume_results Man page Source code
main_docu Man page
masses Man page
mf_data_demo Man page
nice_labels_dt Man page
order_columns Man page Source code
peaklist_demo Man page
read_xml_peaklist Man page Source code
remove_blanks Man page Source code
remove_empty_columns Man page Source code
remove_id_columns Man page Source code
remove_unknown_columns Man page Source code
revert_column_names Man page Source code
subset_known_mf Man page Source code
tab_ume_labels Man page
theme_uplots Man page Source code
ume_assign_formulas Man page Source code
ume_filter_formulas Man page Source code
ume_library_name Source code
uplot_cluster Man page Source code
uplot_cvm Man page Source code
uplot_dbe_minus_o_freq Man page Source code
uplot_dbe_vs_c Man page Source code
uplot_dbe_vs_o Man page Source code
uplot_dbe_vs_ppm Man page Source code
uplot_diff_ms Source code
uplot_freq Man page Source code
uplot_freq_ma Man page Source code
uplot_freq_vs_ppm Man page Source code
uplot_hc_vs_m Man page Source code
uplot_heteroatoms Man page Source code
uplot_isotope_precision Man page Source code
uplot_kmd Man page Source code
uplot_layout Man page Source code
uplot_lcms Man page Source code
uplot_ma_vs_mz Man page Source code
uplot_ms Man page Source code
uplot_n_mf_per_sample Man page Source code
uplot_pca Man page Source code
uplot_ppm_avg Man page Source code
uplot_ratios Man page Source code
uplot_reproducibility Man page Source code
uplot_ri_vs_sample Man page Source code
uplot_vk Man page Source code
ustats_outlier Man page Source code
validate_peaklist Man page Source code
ume documentation built on Dec. 13, 2025, 1:06 a.m.