umx: Structural Equation Modelling in R with 'OpenMx'

Create, run, and report structural equation and twin models quickly. If you're just starting out, try typing '?umx'.

AuthorTimothy C Bates [aut, cre]
Date of publication2017-01-13 00:01:41
MaintainerTimothy C Bates <timothy.c.bates@gmail.com>
LicenseGPL-3
Version1.5.0
http://github.com/tbates/umx

View on CRAN

Man pages

confint.MxModel: Get confidence intervals from an MxModel

dl_from_dropbox: dl_from_dropbox

ex9_6: A multilevel dataset.

extractAIC.MxModel: extractAIC from MxModel

install.OpenMx: install.OpenMx

loadings: loadings Generic loadings function to extract factor loadings...

loadings.MxModel: loadings.MxModel

logLik: logLik.MxModel

plot.MxModel: Create a graphical figure from an MxModel

qm: qm

reliability: reliability

residuals.MxModel: Get residuals from an MxModel

RMSEA: Generic RMSEA function

RMSEA.MxModel: RMSEA function for MxModels

RMSEA.summary.mxmodel: RMSEA function for MxModels

umx: Helper Functions for Structural Equation Modelling in OpenMx

umxACE: umxACE: Build and run a Cholesky (uni- or multi-variate)

umxACEcov: umxACEcov: Build and run a Cholesky with covariates in the...

umxACESexLim: umxACESexLim: Build and run a sex-limitaiton twin model (not...

umxAdd1: umxAdd1

umx_add_variances: umx_add_variances

umx_aggregate: umx_aggregate

umxAPA: umxAPA

umx_APA_model_CI: umx_APA_model_CI

umx_APA_pval: umx_APA_pval

umx_apply: umx_apply

umx_as_numeric: umx_as_numeric

umxCF_SexLim: umxCF_SexLim

umx_check: umx_check

umx_check_model: umx_check_model

umx_check_names: umx_check_names

umx_check_OS: umx_check_OS

umx_check_parallel: umx_check_parallel

umxCI: umxCI

umxCI_boot: umxCI_boot

umxCompare: umxCompare

umx_cont_2_quantiles: umx_cont_2_quantiles

umx_cor: umx_cor

umxCov2cor: umxCov2cor

umx_cov2raw: Turn a cov matrix into raw data with umx_cov2raw

umxCovData: umxCovData

umx_cov_diag: umx_cov_diag

umxCP: umxCP: Build and run a Common pathway twin model

umx_default_option: umx_default_option

umx-deprecated: Deprecated. May already stop() code and ask to be updated....

umxDiagnose: mxDiagnostic

umxDrop1: umxDrop1: Unfinished function to mimic drop1 in OpenMx

umx_drop_ok: umx_drop_ok

umxEFA: umxEFA

umxEquate: umxEquate: Equate two or more paths

umxEval: umxEval

umxExpCov: Get the expected vcov matrix

umx_explode: umx_explode - like the php function 'explode'

umx_explode_twin_names: umx_explode_twin_names

umxExpMeans: umxExpMean

umxFactor: umxFactor

umx_find_object: umx_find_object

umxFitIndices: umxFitIndices

umxFixAll: umxFixAll: Fix all free parameters

umx_fix_first_loadings: umx_fix_first_loadings

umx_fix_latents: umx_fix_latents

umx_fun_mean_sd: umx_fun

umx_get_bracket_addresses: get mat[r,c] style cell address from an mxMatrix

umx_get_checkpoint: umx_get_checkpoint

umx_get_cores: umx_get_cores

umx_get_optimizer: umx_get_optimizer

umx_get_options: umx_get_options

umxGetParameters: umxGetParameters: Get parameters from a model

umx_grep: umx_grep

umxGxE: umxGxE: Implements ACE models with moderation of paths, e.g....

umxGxE_window: umxGxE_window

umx_has_been_run: umx_has_been_run

umx_has_CIs: umx_has_CIs

umx_has_means: umx_has_means

umx_has_square_brackets: umx_has_square_brackets

umxHetCor: umxHetCor

umxIP: umxIP: Build and run an Independent pathway twin model

umx_is_cov: umx_is_cov

umx_is_endogenous: umx_is_endogenous

umx_is_exogenous: umx_is_exogenous

umx_is_MxData: umx_is_ordered

umx_is_MxMatrix: umx_is_MxMatrix

umx_is_MxModel: umx_is_MxModel

umx_is_ordered: umx_is_ordered

umx_is_RAM: umx_is_RAM

umxJiggle: umxJiggle

umxLabel: umxLabel: Add labels to a RAM model, matrix, or path

umxLatent: umxLatent: Helper to ease making formative and reflective...

umx_lower2full: umx_lower2full

umx_make: umx_make umx using devtools

umx_make_bin_cont_pair_data: umx_make_bin_cont_pair_data

umx_make_fake_data: umx_make_fake_data

umx_make_MR_data: Simulate Mendelian Randomization data

umx_make_sql_from_excel: umx_make_sql_from_excel

umx_make_TwinData: umx_make_TwinData: Simulate twin data with control over A, C,...

umxMatrix: umxMatrix: labeled mxMatrix, with name in the first place

umx_means: umx_means

umx_merge_CIs: umx_merge_CIs

umxMI: umxMI

umxModify: umxModify: Add, set, or drop model paths by label.

umx_move_file: umx_move_file

umx_msg: umx_msg

umx_names: umx_names

umx_object_as_str: umx_object_as_str

umx_open: umx_open

umx_pad: Pad an Object with NAs

umxPadAndPruneForDefVars: umxPadAndPruneForDefVars

umx_paste_names: umx_paste_names

umxPath: umxPath: Easier (but powerful) specification of RAM paths.

umx_pb_note: umx_pb_note

umxPlotACE: umxPlotACE

umxPlotACEcov: umxPlotACEcov

umxPlotCP: umxPlotCP

umxPlotGxE: umxPlotGxE

umxPlotIP: umxPlotIP

umx_print: umx_print

umxRAM: umxRAM: Easy-to-use RAM model maker.

umxRAM2Ordinal: umxRAM2Ordinal

umx_read_lower: Read lower-triangle of data matrix from console or file

umxReduce: umxReduce

umx_rename: umx_rename

umx_rename_file: umx_rename_file

umx_reorder: umx_reorder

umx_residualize: umx_residualize

umx_rot: umx_rot

umx_round: umx_round

umxRun: umxRun: Run an mxModel

umx_scale: umx_scale

umx_scale_wide_twin_data: umx_scale_wide_twin_data

umx_set_auto_plot: umx_set_auto_plot

umx_set_auto_run: umx_set_auto_run

umx_set_checkpoint: umx_set_checkpoint

umx_set_condensed_slots: umx_set_condensed_slots

umx_set_cores: umx_set_cores

umx_set_optimizer: umx_set_optimizer

umxSetParameters: umxSetParameters: Set parameters in an mxModel

umx_set_plot_format: umx_set_plot_format

umx_set_table_format: umx_set_table_format

umx_show: umx_show

umx_standardize_ACE: umx_standardize_ACE

umx_standardize_ACEcov: umx_standardize_ACEcov

umx_standardize_CP: umx_standardize_CP

umx_standardize_IP: umx_standardize_IP

umx_standardize_RAM: umx_standardize_RAM

umx_string_to_algebra: umx_string_to_algebra

umxSummary: umxSummary.default

umxSummaryACE: umxSummaryACE

umxSummaryACEcov: umxSummaryACEcov

umxSummaryCP: umxSummaryCP

umxSummaryGxE: umxSummaryGxE

umxSummaryIP: umxSummaryIP

umxSummary.MxModel: umxSummary.MxModel

umx_swap_a_block: umx_swap_a_block

umxThresholdMatrix: umxThresholdMatrix: Helper makes a complete threshold matrix...

umx_time: umx_time

umx_trim: umx_trim

umxTwoStage: umxTwoStage

umxUnexplainedCausalNexus: umxUnexplainedCausalNexus

umxValues: umxValues: Set values in RAM model, matrix, or path

us_skinfold_data: Anthropometric data on twins

xmu_check_levels_identical: xmu_check_levels_identical

xmu_dot_make_paths: xmu_dot_make_paths (not for end users)

xmu_dot_make_residuals: xmu_dot_make_residuals (not for end users)

xmuHasSquareBrackets: xmuHasSquareBrackets

xmuLabel_Matrix: xmuLabel_Matrix (not a user function)

xmuLabel_MATRIX_Model: xmuLabel_MATRIX_Model (not a user function)

xmuLabel_RAM_Model: xmuLabel_RAM_Model (not a user function)

xmuMakeDeviationThresholdsMatrices: Make deviation threshold matrics

xmuMakeOneHeadedPathsFromPathList: xmuMakeOneHeadedPathsFromPathList

xmuMakeThresholdsMatrices: xmuMakeThresholdsMatrices (not a user function)

xmuMakeTwoHeadedPathsFromPathList: xmuMakeTwoHeadedPathsFromPathList

xmuMaxLevels: xmuMaxLevels

xmuMI: xmuMI

xmuMinLevels: xmuMinLevels

xmuPropagateLabels: xmuPropagateLabels (not a user function)

xmu_start_value_list: Make start values

Files in this package

umx
umx/inst
umx/inst/CITATION
umx/inst/extdata
umx/inst/extdata/GQ6.sql.xlsx
umx/NAMESPACE
umx/INSTALL
umx/NEWS
umx/data
umx/data/us_skinfold_data.rda
umx/data/ex9_6.rda
umx/R
umx/R/hermine_original_twinHetMulAceCon.R
umx/R/misc_and_utility.r
umx/R/model_builders.r
umx/R/build_run_modify.r
umx/R/umxCF_SexLim.R umx/R/datasets_openmx.R
umx/R/fit_and_reporting.r
umx/R/xmu.r
umx/R/deprecated.r
umx/R/datasets.R
umx/README.md
umx/MD5
umx/DESCRIPTION
umx/man
umx/man/umxSummaryIP.Rd umx/man/umx_paste_names.Rd umx/man/umx_string_to_algebra.Rd umx/man/umx_default_option.Rd umx/man/umxPlotACE.Rd umx/man/xmuMakeThresholdsMatrices.Rd umx/man/umxThresholdMatrix.Rd umx/man/umx_open.Rd umx/man/umx_make_bin_cont_pair_data.Rd
umx/man/figures
umx/man/figures/IP.png
umx/man/figures/umxLatent.graffle
umx/man/figures/set_default_app.png
umx/man/figures/umxEFA.png
umx/man/figures/umx_help_figures.graffle
umx/man/figures/Duncan.pdf
umx/man/figures/Duncan.png
umx/man/figures/ACE.png
umx/man/figures/CP.png
umx/man/figures/formative.png
umx/man/figures/GxE.png
umx/man/figures/ACEcov.png
umx/man/figures/reflective.png
umx/man/figures/Bivariate_GxE.png
umx/man/umx_print.Rd umx/man/us_skinfold_data.Rd umx/man/umx_scale.Rd umx/man/umxMatrix.Rd umx/man/umx_set_plot_format.Rd umx/man/install.OpenMx.Rd umx/man/umx_set_condensed_slots.Rd umx/man/umxCovData.Rd umx/man/umx_is_endogenous.Rd umx/man/umxTwoStage.Rd umx/man/xmu_dot_make_paths.Rd umx/man/umx_set_checkpoint.Rd umx/man/umxSummaryGxE.Rd umx/man/umx_make_MR_data.Rd umx/man/umxExpCov.Rd umx/man/xmuLabel_MATRIX_Model.Rd umx/man/umxCov2cor.Rd umx/man/umx_explode_twin_names.Rd umx/man/umx_get_checkpoint.Rd umx/man/xmuHasSquareBrackets.Rd umx/man/extractAIC.MxModel.Rd umx/man/umx_has_square_brackets.Rd umx/man/umxSummary.Rd umx/man/umxPlotCP.Rd umx/man/umx_has_means.Rd umx/man/umx_set_cores.Rd umx/man/umx_reorder.Rd umx/man/umx_fun_mean_sd.Rd umx/man/umxCompare.Rd umx/man/umx_standardize_RAM.Rd umx/man/umxRAM.Rd umx/man/umxCI.Rd umx/man/confint.MxModel.Rd umx/man/umxSetParameters.Rd umx/man/umx_rot.Rd umx/man/umx_get_optimizer.Rd umx/man/umx_APA_model_CI.Rd umx/man/umx_is_exogenous.Rd umx/man/umx_grep.Rd umx/man/umxEFA.Rd umx/man/umx_check.Rd umx/man/umx_aggregate.Rd umx/man/dl_from_dropbox.Rd umx/man/umxPath.Rd umx/man/umx_swap_a_block.Rd umx/man/umx_make_fake_data.Rd umx/man/logLik.Rd umx/man/umx_get_options.Rd umx/man/umx_time.Rd umx/man/umx_pb_note.Rd umx/man/RMSEA.Rd umx/man/umx_set_optimizer.Rd umx/man/umx_is_cov.Rd umx/man/xmuPropagateLabels.Rd umx/man/umxGxE.Rd umx/man/xmuMinLevels.Rd umx/man/umx_is_ordered.Rd umx/man/umx_object_as_str.Rd umx/man/umx_standardize_ACE.Rd umx/man/umx_cor.Rd umx/man/umxCP.Rd umx/man/umx_cov2raw.Rd umx/man/umx_pad.Rd umx/man/umx_set_table_format.Rd umx/man/umx_find_object.Rd umx/man/umx_merge_CIs.Rd umx/man/umx_residualize.Rd umx/man/umxAdd1.Rd umx/man/qm.Rd umx/man/umx_is_RAM.Rd umx/man/umxFitIndices.Rd umx/man/RMSEA.MxModel.Rd umx/man/umxFactor.Rd umx/man/umx_standardize_ACEcov.Rd umx/man/umx_is_MxModel.Rd umx/man/umxACESexLim.Rd umx/man/umx_add_variances.Rd umx/man/umx_set_auto_run.Rd umx/man/umx_move_file.Rd umx/man/umxPlotGxE.Rd umx/man/loadings.MxModel.Rd umx/man/umxPadAndPruneForDefVars.Rd umx/man/umx_standardize_IP.Rd umx/man/umxModify.Rd umx/man/umxCI_boot.Rd umx/man/residuals.MxModel.Rd umx/man/xmuMakeTwoHeadedPathsFromPathList.Rd umx/man/umx_read_lower.Rd umx/man/umx_cont_2_quantiles.Rd umx/man/umx_fix_first_loadings.Rd umx/man/umx_lower2full.Rd umx/man/umxValues.Rd umx/man/umx_trim.Rd umx/man/umxSummary.MxModel.Rd umx/man/umx_cov_diag.Rd umx/man/umx_means.Rd umx/man/umx_drop_ok.Rd umx/man/reliability.Rd umx/man/umx.Rd umx/man/umx_make_sql_from_excel.Rd umx/man/umxRun.Rd umx/man/umxLabel.Rd umx/man/umxACE.Rd umx/man/umxSummaryACE.Rd umx/man/xmu_check_levels_identical.Rd umx/man/xmu_start_value_list.Rd umx/man/umx_get_cores.Rd umx/man/umx_round.Rd umx/man/umx-deprecated.Rd umx/man/umxEquate.Rd umx/man/umxRAM2Ordinal.Rd umx/man/umx_set_auto_plot.Rd umx/man/umx_explode.Rd umx/man/umxExpMeans.Rd umx/man/umx_as_numeric.Rd umx/man/RMSEA.summary.mxmodel.Rd umx/man/plot.MxModel.Rd umx/man/umx_make_TwinData.Rd umx/man/umxUnexplainedCausalNexus.Rd umx/man/xmuMakeDeviationThresholdsMatrices.Rd umx/man/ex9_6.Rd umx/man/umxPlotACEcov.Rd umx/man/umxJiggle.Rd umx/man/loadings.Rd umx/man/umx_has_CIs.Rd umx/man/xmuMaxLevels.Rd umx/man/umxCF_SexLim.Rd umx/man/umxSummaryACEcov.Rd umx/man/umx_fix_latents.Rd umx/man/umxAPA.Rd umx/man/umx_check_names.Rd umx/man/umxPlotIP.Rd umx/man/umxDiagnose.Rd umx/man/umxGxE_window.Rd umx/man/umx_rename_file.Rd umx/man/umx_rename.Rd umx/man/umx_check_model.Rd umx/man/xmuMI.Rd umx/man/umxFixAll.Rd umx/man/umxACEcov.Rd umx/man/umx_is_MxMatrix.Rd umx/man/xmuMakeOneHeadedPathsFromPathList.Rd umx/man/umxIP.Rd umx/man/umx_show.Rd umx/man/umx_check_parallel.Rd umx/man/umxLatent.Rd umx/man/umxEval.Rd umx/man/umxHetCor.Rd umx/man/xmuLabel_Matrix.Rd umx/man/umxGetParameters.Rd umx/man/umx_msg.Rd umx/man/umxSummaryCP.Rd umx/man/umx_make.Rd umx/man/umx_standardize_CP.Rd umx/man/umx_scale_wide_twin_data.Rd umx/man/umx_is_MxData.Rd umx/man/umx_get_bracket_addresses.Rd umx/man/umxDrop1.Rd umx/man/umxReduce.Rd umx/man/umx_names.Rd umx/man/umx_has_been_run.Rd umx/man/umx_apply.Rd umx/man/xmuLabel_RAM_Model.Rd umx/man/xmu_dot_make_residuals.Rd umx/man/umx_APA_pval.Rd umx/man/umx_check_OS.Rd umx/man/umxMI.Rd

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

All documentation is copyright its authors; we didn't write any of that.