vacem: Vaccination Activities Coverage Estimation Model

A likelihood framework for estimating the effective coverage of vaccination programs using cross-sectional surveys combined with administrative data.

Author
Justin Lessler <jlessler@jhsph.edu>, Jessica Metcalf <cmetcalf@@princeton.edu>
Date of publication
2012-01-31 06:39:02
Maintainer
Ken Cline <kcline@jhsph.edu>
License
GPL (>= 2)
Version
0.1-1

View on CRAN

Man pages

calc.camp.coverage
Calculate the expected coverage of each campaign given...
constant.post.9mo
Defines a simple cumulative distribution function (CDF)...
DAYS.PER.MONTH
The average number of days per month.
E.vacc
Calculates the expected number of vaccinations for...
g
Calculates the vaccination probability for individuals.
get.E.vacc
Calculates the expected number of vaccinations for all...
get.prob.vacc
Calculates the vaccination probability for all individuals in...
ll.coverage
Gets the log likelihood of a set of observations.
ll.coverage.optim
Log likelihood for using optim.
ll.coverage.optim.const.post.9m
Log likelihood for using optim.
logistic
Defines a simple logistic function, @f$ e^x / (1 + e^x) @f$.
make.sample.pop
Generates a sample survey population with ages uniformly...
mcmc.converge
Function to assess MCMC convergance of a chain given a matrix...
mcmc.estimate
Quick and dirty roll your own MCMC for determining the CI for...
nine.month.pointmass
Defines a simple cumulative distribution function (CDF)...
sim.n.vacc.sample.pop
Calculates the number of vaccinations each member of a sample...
vaccinate.sample.pop
Vaccinates a sample population based on probabilities...
vacem-package
Vaccination Activities Coverage Estimation Model
w.matrix
Creates a weight matrix from (1) immunization information for...
z.matrix
Creates an eligibility matrix, i...

Files in this package

vacem
vacem/MD5
vacem/NAMESPACE
vacem/LICENSE
vacem/man
vacem/man/mcmc.estimate.Rd
vacem/man/E.vacc.Rd
vacem/man/ll.coverage.Rd
vacem/man/g.Rd
vacem/man/z.matrix.Rd
vacem/man/DAYS.PER.MONTH.Rd
vacem/man/ll.coverage.optim.const.post.9m.Rd
vacem/man/constant.post.9mo.Rd
vacem/man/nine.month.pointmass.Rd
vacem/man/ll.coverage.optim.Rd
vacem/man/vaccinate.sample.pop.Rd
vacem/man/calc.camp.coverage.Rd
vacem/man/make.sample.pop.Rd
vacem/man/vacem-package.Rd
vacem/man/mcmc.converge.Rd
vacem/man/sim.n.vacc.sample.pop.Rd
vacem/man/w.matrix.Rd
vacem/man/get.E.vacc.Rd
vacem/man/get.prob.vacc.Rd
vacem/man/logistic.Rd
vacem/tests
vacem/tests/coverageTest.r
vacem/tests/testUtils.r
vacem/tests/runAllTests.r
vacem/R
vacem/R/analysis.r
vacem/R/sample.r
vacem/R/coverage.r
vacem/R/vacem.r
vacem/DESCRIPTION