A likelihood framework for estimating the effective coverage of vaccination programs using cross-sectional surveys combined with administrative data.

Install the latest version of this package by entering the following in R:

`install.packages("vacem")`

Author | Justin Lessler <jlessler@jhsph.edu>, Jessica Metcalf <cmetcalf@@princeton.edu> |

Date of publication | 2012-01-31 06:39:02 |

Maintainer | Ken Cline <kcline@jhsph.edu> |

License | GPL (>= 2) |

Version | 0.1-1 |

**calc.camp.coverage:** Calculate the expected coverage of each campaign given...

**constant.post.9mo:** Defines a simple cumulative distribution function (CDF)...

**DAYS.PER.MONTH:** The average number of days per month.

**E.vacc:** Calculates the expected number of vaccinations for...

**g:** Calculates the vaccination probability for individuals.

**get.E.vacc:** Calculates the expected number of vaccinations for all...

**get.prob.vacc:** Calculates the vaccination probability for all individuals in...

**ll.coverage:** Gets the log likelihood of a set of observations.

**ll.coverage.optim:** Log likelihood for using optim.

**ll.coverage.optim.const.post.9m:** Log likelihood for using optim.

**logistic:** Defines a simple logistic function, @f$ e^x / (1 + e^x) @f$.

**make.sample.pop:** Generates a sample survey population with ages uniformly...

**mcmc.converge:** Function to assess MCMC convergance of a chain given a matrix...

**mcmc.estimate:** Quick and dirty roll your own MCMC for determining the CI for...

**nine.month.pointmass:** Defines a simple cumulative distribution function (CDF)...

**sim.n.vacc.sample.pop:** Calculates the number of vaccinations each member of a sample...

**vaccinate.sample.pop:** Vaccinates a sample population based on probabilities...

**vacem-package:** Vaccination Activities Coverage Estimation Model

**w.matrix:** Creates a weight matrix from (1) immunization information for...

**z.matrix:** Creates an eligibility matrix, i...

calc.camp.coverage | Man page |

constant.post.9mo | Man page |

DAYS.PER.MONTH | Man page |

E.vacc | Man page |

g | Man page |

get.E.vacc | Man page |

get.prob.vacc | Man page |

ll.coverage | Man page |

ll.coverage.optim | Man page |

ll.coverage.optim.const.post.9m | Man page |

logistic | Man page |

make.sample.pop | Man page |

mcmc.converge | Man page |

mcmc.estimate | Man page |

nine.month.pointmass | Man page |

sim.n.vacc.sample.pop | Man page |

vaccinate.sample.pop | Man page |

vacem-package | Man page |

w.matrix | Man page |

z.matrix | Man page |

MD5

NAMESPACE

LICENSE

man

man/mcmc.estimate.Rd
man/E.vacc.Rd
man/ll.coverage.Rd
man/g.Rd
man/z.matrix.Rd
man/DAYS.PER.MONTH.Rd
man/ll.coverage.optim.const.post.9m.Rd
man/constant.post.9mo.Rd
man/nine.month.pointmass.Rd
man/ll.coverage.optim.Rd
man/vaccinate.sample.pop.Rd
man/calc.camp.coverage.Rd
man/make.sample.pop.Rd
man/vacem-package.Rd
man/mcmc.converge.Rd
man/sim.n.vacc.sample.pop.Rd
man/w.matrix.Rd
man/get.E.vacc.Rd
man/get.prob.vacc.Rd
man/logistic.Rd
tests

tests/coverageTest.r
tests/testUtils.r
tests/runAllTests.r
R

R/analysis.r
R/sample.r
R/coverage.r
R/vacem.r
DESCRIPTION

Questions? Problems? Suggestions? Tweet to @rdrrHQ or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.

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