mcmc.estimate: Quick and dirty roll your own MCMC for determining the CI for...

In vacem: Vaccination Activities Coverage Estimation Model

Description

Quick and dirty roll your own MCMC for determining the CI for rho and alpha.

Usage

mcmc.estimate(obs, campaigns, keep.from=1, n.iter=1000, n.chains=5,
    trans.rho.start=0.5, alpha.start=0, trans.rho.sd=0.1, alpha.sd=0.1,
    routine.cdf="9m.pointmass", routine.par.start=c(),
    routine.par.sd=rep(0.1, length(routine.par.start)), z,
    plot.as.go=FALSE, plot.freq=10)

Arguments

obs	the number of observations
campaigns	TBD
keep.from	TBD
n.iter	the number of interations to do
n.chains	the number of chains to run
trans.rho.start	starting point for rho
alpha.start	starting point for alpha
trans.rho.sd	standard deviation to use for proposal rhos
alpha.sd	standard deviation to us for proposal alphas
routine.cdf	TBD
routine.par.start	TBD
routine.par.sd	TBD
z	TBD
plot.as.go	TBD
plot.freq	TBD

Value

matrix of all of the chains for alpha and trans.rho.start

vacem documentation built on April 14, 2017, 7:28 p.m.