varComp: Variance Component Models

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Variance component models: REML estimation, testing fixed effect contrasts through Satterthwaite or Kenward-Roger methods, testing the nullity of variance components through (linear or quadratic) score tests or likelihood ratio tests.

Author
Long Qu (long.qu@wright.edu)
Date of publication
2015-02-06 18:45:44
Maintainer
Long Qu <long.qu@wright.edu>
License
GPL-3
Version
0.1-360

View on CRAN

Man pages

anova.varComp
ANOVA-type analysis of fixed effect parameters
chibarsq
Chi-bar-square distribution with nonnegativity cone...
cholRoot
Lower Cholesky Root
coef.varComp
Obtaining parameter estimates from a varComp object
formulas
Internal formula term manipulation functions
get.seed
Recording pseudo-random number seeds
is.formula
Check if an object is a formula
kernels
Kernel functions useful for genetic associations
logLik.varComp
Extracting Profiled Restricted Log Likelihood
minque
Minimum norm quadratic unbiased estimation
model.matrix.varComp
Extracting model matrices
normalizeTrace
Rescales a square matrix such that the trace is the same as...
print.varComp
Summary and printing of varComp objects
print.varComp.test
Print variance component test results
p.value.varComp.test
Extracting p-values
safeseq
A "safer" seq
symbols
Some symbols that might be used in formulas
varComp
Fitting variance component models
varComp.control
Functions controlling the model fitting of varComp
varComp-defunct
Defunct functions
varComp-internal
Internal functions not supposed to be called directly
varComp-notImplemented
Not-yet-implemented functions
varComp-package
Variance Component Models
varComp.test
Tests for Nullity of Variance Components
varComp.test.control
Control of variance component testing
vcov.varComp
Extracting Variance-Covariance Matrices
Wald.varComp
Wald-type tests for fixed effect parameters

Files in this package

varComp
varComp/NAMESPACE
varComp/R
varComp/R/pchibarsq.R
varComp/R/varComp-defunct.R
varComp/R/varComp.LinScore.SSAS155.R
varComp/R/varComp-const.R
varComp/R/print.varComp.R
varComp/R/varComp.LinScore.Normal.R
varComp/R/varComp.VM03.test.R
varComp/R/minque.R
varComp/R/model.matrix.varComp.R
varComp/R/varComp.LinScore.test.R
varComp/R/varComp.RLRT.test.R
varComp/R/anova.varComp.R
varComp/R/varComp.test.R
varComp/R/coef.varComp.R
varComp/R/varComp-notImplemented.R
varComp/R/kernels.R
varComp/R/varComp-utilities.R
varComp/R/logLik.varComp.R
varComp/R/fixef.varComp.R
varComp/R/varComp.test.control.R
varComp/R/vcov.varComp.R
varComp/R/varComp.R
varComp/R/p.value.R
varComp/R/satterth.R
varComp/R/KR.varComp.R
varComp/R/varComp-internal.R
varComp/R/varComp.LinScore.Satterthwaite.R
varComp/R/varComp.SS95.test.R
varComp/R/print.varComp.test.R
varComp/R/formulas.R
varComp/MD5
varComp/DESCRIPTION
varComp/man
varComp/man/kernels.Rd
varComp/man/logLik.varComp.Rd
varComp/man/varComp.test.Rd
varComp/man/p.value.varComp.test.Rd
varComp/man/formulas.Rd
varComp/man/varComp-notImplemented.Rd
varComp/man/varComp-defunct.Rd
varComp/man/normalizeTrace.Rd
varComp/man/print.varComp.Rd
varComp/man/is.formula.Rd
varComp/man/varComp.test.control.Rd
varComp/man/model.matrix.varComp.Rd
varComp/man/varComp-package.Rd
varComp/man/Wald.varComp.Rd
varComp/man/vcov.varComp.Rd
varComp/man/varComp-internal.Rd
varComp/man/anova.varComp.Rd
varComp/man/print.varComp.test.Rd
varComp/man/chibarsq.Rd
varComp/man/safeseq.Rd
varComp/man/varComp.control.Rd
varComp/man/varComp.Rd
varComp/man/get.seed.Rd
varComp/man/minque.Rd
varComp/man/coef.varComp.Rd
varComp/man/symbols.Rd
varComp/man/cholRoot.Rd
varComp/INDEX