Description Usage Arguments Author(s) References See Also Examples

This function produces a plot depicting the phenotype distribution, the distribution of carriers of the rare alleles, and also can include the posterior probaiblity of association as estimated by the vbdm algorithm.

1 2 3 |

`y` |
A vector of continuous phenotypes. |

`G` |
A matrix of genotypes that are encoded as 0, 1, or 2. |

`annotation` |
A vector of SNP annotations for the columns of G. The default is |

`title` |
An optional title for the plot. |

`order` |
How the variants should be ordered in the bottom quadrant of the plot. Possible options include |

`legend` |
If |

`type` |
If |

`post` |
Optional vector of posterior probabilities from |

`name.snp` |
Optional vector of snp names. |

Paul L. Auer (paul.wl.auer@gmail.com), Benjamin A. Logsdon (blogsdon@uw.edu)

Logsdon, B.A., et al. (2014)
*A Variational Bayes Discrete Mixture Test for
Rare Variant Association.*,
*Genetic Epidemiology, Vol. 38(1), 21-30 2014*

1 2 3 4 5 6 7 8 9 10 |

Embedding an R snippet on your website

Add the following code to your website.

For more information on customizing the embed code, read Embedding Snippets.