vegclust: Fuzzy Clustering of Vegetation Data

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Contains functions used to perform fuzzy clustering of vegetation data under different models. It also includes functions to measure community dissimilarity on the basis of structure and composition.

Author
Miquel De Caceres
Date of publication
2016-05-19 17:55:14
Maintainer
Miquel De Caceres <miquelcaceres@gmail.com>
License
GPL (>= 2)
Version
1.6.4

View on CRAN

Man pages

as.memb
Turns into membership matrix
as.vegclust
Turns into vegclust objects
CAP
Cumulative abundance profile (CAP)
CAS
Cumulative abundance surface (CAS)
clustcentroid
Cluster centers of a classification
clustconst
Constancy table of a classification
clustvar
Cluster variance
concordance
Concordance between two classifications
conformveg
Conform two community data tables
crossmemb
Cross-table of two fuzzy classifications
defuzzify
Defuzzifies a fuzzy partition
hcr
Heterogeneity-constrained random resampling (HCR)
hier.vegclust
Clustering with several number of clusters
incr.vegclust
Noise clustering with increasing number of clusters
interclustdist
Calculates the distance between pairs of cluster centroids
medreg
Regeneration of Mediterranean vegetation data set
plot.CAP
Draws cummulative abundance profiles
plot.CAS
Draws a cummulative abundance surface
plot.mvegclust
Plots clustering results
relate.levels
Relates two clustering level results.
stratifyvegdata
Reshapes community data from individual into stratified form
treedata
Synthetic vegetation data set with tree data
vegclass
Classifies vegetation communities
vegclust
Vegetation clustering methods
vegclust2kmeans
Reshapes as kmeans object
vegclustIndex
Compute fuzzy evaluation statistics
vegclust-package
Functions for fuzzy and hard clustering of vegetation data
vegdiststruct
Structural and compositional dissimilarity
wetland
Wetland vegetation data set

Files in this package

vegclust
vegclust/inst
vegclust/inst/CITATION
vegclust/inst/doc
vegclust/inst/doc/VegetationClassification.Rnw
vegclust/inst/doc/VegetationClassification.pdf
vegclust/inst/doc/MedRegExample.Rnw
vegclust/inst/doc/VegetationClassification.R
vegclust/inst/doc/MedRegExample.R
vegclust/inst/doc/MedRegExample.pdf
vegclust/NAMESPACE
vegclust/data
vegclust/data/treedata.rda
vegclust/data/wetland.rda
vegclust/data/medreg.rda
vegclust/R
vegclust/R/interclustdist.R
vegclust/R/vegclass.R
vegclust/R/plot.mvegclust.R
vegclust/R/CAP.R
vegclust/R/as.vegclust.R
vegclust/R/plot.stratifiedvegdata.R
vegclust/R/clustmedoid.R
vegclust/R/hcr.R
vegclust/R/clustconst.R
vegclust/R/vegclust.R
vegclust/R/concordance.R
vegclust/R/CAPcenters.R
vegclust/R/hier.vegclust.R
vegclust/R/as.memb.R
vegclust/R/vegdiststruct.R
vegclust/R/conformveg.R
vegclust/R/as.stratifiedvegdata.R
vegclust/R/crossmemb.R
vegclust/R/CAScenters.R
vegclust/R/CAP2matrix.R
vegclust/R/CAPquantile.R
vegclust/R/CAS.R
vegclust/R/CASquantile.R
vegclust/R/clustvar.R
vegclust/R/CAS2matrix.R
vegclust/R/plot.CAP.R
vegclust/R/relate.levels.R
vegclust/R/stratifyvegdata.R
vegclust/R/defuzzify.R
vegclust/R/summary.clustconst.R
vegclust/R/incr.vegclust.R
vegclust/R/hier.vegclustdist.R
vegclust/R/CASmargin.R
vegclust/R/vegclust2kmeans.R
vegclust/R/random.vegclust.R
vegclust/R/clustcentroid.R
vegclust/R/vegclustdist.R
vegclust/R/plot.CAS.R
vegclust/R/vegclustIndex.R
vegclust/R/random.vegclustdist.R
vegclust/vignettes
vegclust/vignettes/MedRegExample-027.pdf
vegclust/vignettes/vegclust.bib
vegclust/vignettes/MedRegExample-011.pdf
vegclust/vignettes/VegetationClassification.Rnw
vegclust/vignettes/MedRegExample-009.pdf
vegclust/vignettes/MedRegExample-008.pdf
vegclust/vignettes/MedRegExample-025.pdf
vegclust/vignettes/MedRegExample-023.pdf
vegclust/vignettes/MedRegExample-015.pdf
vegclust/vignettes/MedRegExample-016.pdf
vegclust/vignettes/MedRegExample.Rnw
vegclust/vignettes/MedRegExample-018.pdf
vegclust/vignettes/MedRegExample-021.pdf
vegclust/vignettes/MedRegExample-022.pdf
vegclust/vignettes/MedRegExample-014.pdf
vegclust/vignettes/MedRegExample-013.pdf
vegclust/vignettes/MedRegExample-026.pdf
vegclust/vignettes/MedRegExample-031.pdf
vegclust/vignettes/MedRegExample-028.pdf
vegclust/vignettes/MedRegExample-012.pdf
vegclust/vignettes/MedRegExample-019.pdf
vegclust/vignettes/MedRegExample-030.pdf
vegclust/MD5
vegclust/build
vegclust/build/vignette.rds
vegclust/DESCRIPTION
vegclust/man
vegclust/man/vegclustIndex.Rd
vegclust/man/stratifyvegdata.Rd
vegclust/man/clustcentroid.Rd
vegclust/man/crossmemb.Rd
vegclust/man/interclustdist.Rd
vegclust/man/vegclust.Rd
vegclust/man/CAS.Rd
vegclust/man/clustvar.Rd
vegclust/man/treedata.Rd
vegclust/man/medreg.Rd
vegclust/man/vegdiststruct.Rd
vegclust/man/wetland.Rd
vegclust/man/conformveg.Rd
vegclust/man/vegclust2kmeans.Rd
vegclust/man/defuzzify.Rd
vegclust/man/incr.vegclust.Rd
vegclust/man/vegclust-package.Rd
vegclust/man/relate.levels.Rd
vegclust/man/as.vegclust.Rd
vegclust/man/concordance.Rd
vegclust/man/plot.CAS.Rd
vegclust/man/CAP.Rd
vegclust/man/vegclass.Rd
vegclust/man/hcr.Rd
vegclust/man/clustconst.Rd
vegclust/man/plot.CAP.Rd
vegclust/man/plot.mvegclust.Rd
vegclust/man/as.memb.Rd
vegclust/man/hier.vegclust.Rd