vegdata: Access Vegetation Databases and Treat Taxonomy

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Handling of vegetation data from Turboveg (<http://www.synbiosys.alterra.nl/turboveg/>) and other sources (<http://www.vegetweb.de>). Taxonomic harmonization given appropriate taxonomic lists (e.g. the German taxonomical standard list "GermanSL", <http://www.botanik.uni-greifswald.de/GermanSL.html>).

Author
Florian Jansen <jansen@uni-greifswald.de>
Date of publication
2016-07-15 10:31:42
Maintainer
Florian Jansen <jansen@uni-greifswald.de>
License
GPL (>= 2)
Version
0.9
URLs

View on CRAN

Man pages

elbaue
Species Data and Altitude from floodplains of the river Elbe,...
isc
Indicate site conditions with community weighted mean values...
lc
Templates for pseudo-species according to Turboveg layer...
monotypic
Creates a list of (regional) monotypic taxa from the given...
syntab
Syntaxonomic frequency tables
tax
Query of Turboveg 2 taxonomic reference lists including (if...
taxval
Handling of taxonomy in vegetation data.
tv.biblio
Check bibliographic references from Turboveg codes
tv.comprefl
Compare different taxonomical reference lists.
tv.coverperc
Cover code translation
tv.metadata
Show metainfo of vegetation database or ecodbase
tv.obs
Dataframe of plot-species observations directly from Turboveg
tv.site
Load site data from Turboveg Database
tv.traits
Load species traits from Turboveg reference list
tv.veg
Tabulates vegetation tables from Turboveg database
tv.write
Write species-plot observations and site information to...
vegdata-internal
Internal vegdata functions
vegdata-package
Functions to access data from vegetation databases and...
vegetweb
Retrieve data from vegetweb

Files in this package

vegdata
vegdata/inst
vegdata/inst/CITATION
vegdata/inst/tvdata
vegdata/inst/tvdata/Popup
vegdata/inst/tvdata/Popup/tvscale.dbf
vegdata/inst/tvdata/Popup/tvrefenc.dbf
vegdata/inst/tvdata/Species
vegdata/inst/tvdata/Species/TaxrefExample.zip
vegdata/inst/tvdata/Species/README
vegdata/inst/tvdata/Data
vegdata/inst/tvdata/Data/elbaue
vegdata/inst/tvdata/Data/elbaue/metadata.txt
vegdata/inst/tvdata/Data/elbaue/tvwin.dbf
vegdata/inst/tvdata/Data/elbaue/remarks.dbf
vegdata/inst/tvdata/Data/elbaue/TvAdmin.dbf
vegdata/inst/tvdata/Data/elbaue/tvhabita.dbf
vegdata/inst/tvdata/Data/elbaue/tvabund.dbf
vegdata/inst/tvdata/Data/elbaue/tvwin.set
vegdata/inst/tvdata/Data/elbaue.xml
vegdata/inst/tvdata/Data/taxatest
vegdata/inst/tvdata/Data/taxatest/metadata.txt
vegdata/inst/tvdata/Data/taxatest/tvwin.dbf
vegdata/inst/tvdata/Data/taxatest/remarks.dbf
vegdata/inst/tvdata/Data/taxatest/TvAdmin.dbf
vegdata/inst/tvdata/Data/taxatest/tvhabita.dbf
vegdata/inst/tvdata/Data/taxatest/tvabund.dbf
vegdata/inst/tvdata/Data/taxatest/tvwin.set
vegdata/inst/ChangeLog
vegdata/inst/doc
vegdata/inst/doc/vegdata.Rnw
vegdata/inst/doc/vegdata.R
vegdata/inst/doc/vegdata.pdf
vegdata/tests
vegdata/tests/testthat.R
vegdata/tests/testthat
vegdata/tests/testthat/obs.rds
vegdata/tests/testthat/test.R
vegdata/NAMESPACE
vegdata/data
vegdata/data/lc.all.csv.gz
vegdata/data/lc.1.csv.gz
vegdata/data/lc.0.csv.gz
vegdata/R
vegdata/R/tv.coverperc.r
vegdata/R/isc.r
vegdata/R/tax_add.r
vegdata/R/syntab.r
vegdata/R/child.r
vegdata/R/monotypic.r
vegdata/R/comb.species.r
vegdata/R/taxval.r
vegdata/R/tv.compRefl.r
vegdata/R/reShape.veg.r
vegdata/R/tv.veg.r
vegdata/R/tv.home.r
vegdata/R/vegetweb.r
vegdata/R/tv.obs.r
vegdata/R/reflist.r
vegdata/R/tv.site.r
vegdata/R/tv.traits.r
vegdata/R/internal.r
vegdata/R/tax.r
vegdata/R/zzz.r
vegdata/R/tv.write.r
vegdata/vignettes
vegdata/vignettes/vegdata.Rnw
vegdata/vignettes/googleVis.jpg
vegdata/vignettes/veronica.png
vegdata/vignettes/lib.bib
vegdata/MD5
vegdata/build
vegdata/build/vignette.rds
vegdata/DESCRIPTION
vegdata/man
vegdata/man/tv.coverperc.Rd
vegdata/man/isc.Rd
vegdata/man/syntab.Rd
vegdata/man/monotypic.Rd
vegdata/man/taxval.Rd
vegdata/man/tv.site.Rd
vegdata/man/vegdata-internal.Rd
vegdata/man/vegdata-package.Rd
vegdata/man/tv.traits.Rd
vegdata/man/tv.veg.Rd
vegdata/man/lc.Rd
vegdata/man/elbaue.Rd
vegdata/man/tv.obs.Rd
vegdata/man/tax.Rd
vegdata/man/vegetweb.Rd
vegdata/man/tv.biblio.Rd
vegdata/man/tv.write.Rd
vegdata/man/tv.metadata.Rd
vegdata/man/tv.comprefl.Rd