Man pages for vhcub
Virus-Host Codon Usage Co-Adaptation Analysis
| CAI.values | Codon Adaptation Index (CAI) |
| dinuc.base | Statistical dinucleotide over- and underrepresentation (base... |
| dinuc.codon | Statistical dinucleotide over- and underrepresentation (codon... |
| dinuc.syncodon | Statistical dinucleotide over- and underrepresentation... |
| ENc.GC3plot | ENc-GC3 scatterplot. |
| ENc.values | Effective Number of Codons (ENc). |
| fasta.read | Read fasta formate and convert it to data frame |
| GC.content | GC content |
| PR2.plot | Parity rule 2 (PR2) plot |
| RCDI.values | Relative Codon Deoptimization Index (RCDI) |
| RSCU.values | Relative Synonymous Codon Usage (RSCU) |
| SCUO.values | Synonymous codon usage eorderliness (SCUO) |
| SiD.value | Similarity Index (SiD) |
| vhcub | vhcub: A package to analysis the co-adaptation of codon usage... |
