integrations: Data on HIV integration sites from several studies
In vipor: Plot Categorical Data Using Quasirandom Noise and Density Estimates
Description
Usage
Format
Source
References
Description
A dataset containing data from a meta-analysis looking for differences between active and inactive HIV integrations. Each row represents a provirus integrated somewhere in a human chromosome with whether viral expression was detectd, the distance to the nearest gene and the number of reads from H4K12ac ChIP-Seq mapped to within 50,000 bases of the integration.
Usage
1
Format
A data frame with 12436 rows and 4 variables:
- study
the cell population infected by HIV
- latent
whether the provirus was active (expressed) or inactive (latent)
- nearestGene
distance to nearest gene (transcription unit) (0 if in a gene)
- H4K12ac
number of reads aligned within +- 50,000 bases in a H4K12ac ChIP-Seq
Source
http://www.retrovirology.com/content/10/1/90/additional, system.file("data-raw", "makeIntegrations.R", package = "vipor")
References
http://www.retrovirology.com/content/10/1/90
vipor documentation built on May 1, 2019, 7:06 p.m.
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Description Usage Format Source References
Description
A dataset containing data from a meta-analysis looking for differences between active and inactive HIV integrations. Each row represents a provirus integrated somewhere in a human chromosome with whether viral expression was detectd, the distance to the nearest gene and the number of reads from H4K12ac ChIP-Seq mapped to within 50,000 bases of the integration.
Usage
1 |
Format
A data frame with 12436 rows and 4 variables:
- study
the cell population infected by HIV
- latent
whether the provirus was active (expressed) or inactive (latent)
- nearestGene
distance to nearest gene (transcription unit) (0 if in a gene)
- H4K12ac
number of reads aligned within +- 50,000 bases in a H4K12ac ChIP-Seq
Source
http://www.retrovirology.com/content/10/1/90/additional, system.file("data-raw", "makeIntegrations.R", package = "vipor")
References
http://www.retrovirology.com/content/10/1/90
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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