tableone: Display a summary Table (i.e. table one)

In visR: Clinical Graphs and Tables Adhering to Graphical Principles

Display a summary Table (i.e. table one)

Description

Wrapper function to produce a summary table (i.e. Table One). Create and render a summary table for a dataset. A typical example of a summary table are "table one", the first table in an applied medical research manuscript.

Calculate summary statistics and present them in a formatted table

Usage

tableone(
  data,
  title,
  datasource,
  footnote = "",
  strata = NULL,
  overall = TRUE,
  summary_function = summarize_short,
  ...
)

Arguments

data	The dataframe or tibble to visualize
title	Table title to include in the rendered table. Input is a text string.
datasource	String specifying the datasource underlying the data set
footnote	Table footnote to include in the rendered table. Input is a text string.
strata	Character vector with column names to use for stratification in the summary table. Default: NULL , which indicates no stratification.
overall	If TRUE, the summary statistics for the overall dataset are also calculated
summary_function	A function defining summary statistics for numeric and categorical values Pre-implemented functions are summarize_long and summarize_short
...	Pass options to render_table

Value

A table-like data structure, possibly interactive depending on the choice of the engine

Example Output

tableone(engine = "gt")

tableone(engine = "DT")

tableone(engine = "kable")

tableone(engine = "kable", output_format = "latex")

Examples

# metadata for table
t1_title <- "Cohort Summary"
t1_ds <- "ADaM Interim Dataset for Time-to-Event Analysis"
t1_fn <- "My table one footnote"


## table by treatment - without overall and render with GT
tbl_gt <-
  adtte %>%
  dplyr::filter(SAFFL == "Y") %>%
  dplyr::select(AGE, AGEGR1, SEX, EVNTDESC, TRTA) %>%
  visR::tableone(
    strata = "TRTA",
    overall = FALSE,
    title = t1_title,
    datasource = t1_ds,
    footnote = t1_fn,
    engine = "gt"
  )

## table by treatment - without overall and render with DT
tbl_DT <-
  adtte %>%
  dplyr::filter(SAFFL == "Y") %>%
  dplyr::select(AGE, AGEGR1, SEX, EVNTDESC, TRTA) %>%
  visR::tableone(
    strata = "TRTA",
    overall = FALSE,
    title = t1_title,
    datasource = t1_ds,
    footnote = t1_fn,
    engine = "DT"
  )

## table by treatment - without overall and render with kable
tbl_kable_html <-
  adtte %>%
  dplyr::filter(SAFFL == "Y") %>%
  dplyr::select(AGE, AGEGR1, SEX, EVNTDESC, TRTA) %>%
  visR::tableone(
    strata = "TRTA",
    overall = FALSE,
    title = t1_title,
    datasource = t1_ds,
    footnote = t1_fn,
    engine = "kable"
  )

## table by treatment - without overall and render with kable as
## a latex table format rather than html
tbl_kable_latex <-
  adtte %>%
  dplyr::filter(SAFFL == "Y") %>%
  dplyr::select(AGE, AGEGR1, SEX, EVNTDESC, TRTA) %>%
  visR::tableone(
    strata = "TRTA",
    overall = FALSE,
    title = t1_title,
    datasource = t1_ds,
    footnote = t1_fn,
    output_format = "latex",
    engine = "kable"
  )

visR documentation built on Nov. 21, 2023, 1:07 a.m.