wTO: Computing Weighted Topological Overlaps (wTO) & Consensus wTO Network

Computes the Weighted Topological Overlap with positive and negative signs (wTO) networks given a data frame containing the mRNA count/ expression/ abundance per sample, and a vector containing the interested nodes of interaction (a subset of the elements of the full data frame). It also computes the cut-off threshold or p-value based on the individuals bootstrap or the values reshuffle per individual. It also allows the construction of a consensus network, based on multiple wTO networks. The package includes a visualization tool for the networks. More about the methodology can be found at <arXiv:1711.04702>.

Package details

AuthorDeisy Morselli Gysi, Andre Voigt, Tiago Miranda Fragoso, Eivind Almaas and Katja Nowick.
MaintainerDeisy Morselli Gysi <[email protected]>
LicenseGPL-2
Version1.6.3
Package repositoryView on CRAN
Installation Install the latest version of this package by entering the following in R:
install.packages("wTO")

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wTO documentation built on Nov. 17, 2018, 5:03 p.m.