map: SNP description in MAP format

In waffect: A package to simulate constrained phenotypes under a disease model H1

Description

This dataset describes the SNPs to be considered in the tutorial for assessing the statistical power of GWAs with waffect (see the vignette). There are 1000 rows, one for each marker, and 4 columns:

• chr: the chromosome, here all the SNPs are on X

• SNP_id: the SNP identifier, here an integer from 1 to 1000

• dist: the genetic distance, here a dummy variable set to 0 for all the SNPs

• bp_pos: the base-pair position, here an integer from 1 to 1000.

Before using this dataset with PLINK it is necessary to save it into a file with extension .map (see the vignette).

Usage

data(map)

Format

A table with 1000 rows and 4 columns.

waffect documentation built on May 2, 2019, 6:11 a.m.