Man pages for wallace
A Modular Platform for Reproducible Modeling of Species Niches and Distributions

clearAllclearAll
create_moduleCreate a Wallace module
ecoClimate_getdataecoClimate_getdata
ecoClimate_selectecoClimate_select
ecospat.plot.nicheDEVecospat.plot.nicheDEV
envs_ecoClimateenvs_ecoClimate Obtain ecoClimate variables
envs_userEnvsenvs_userEnvs
envs_worldclimenvs_worldclim Obtain WorldClim variables
espace_nicheOvespace_nicheOv Niche Overlap
espace_occDensOccurrence density grid
espace_pcaespace_pca Principal component analysis
fmtSpNfmtSpN
getRasterValsgetRasterVals
hlSpphlSpp
model_bioclimmodel_bioclim Generate Bioclim model
model_maxentmodel_maxent Generate maxent.jar or maxnet model
mxNonzeroCoefsmxNonzeroCoefs
occs_queryDboccs_queryDb Query online database for species occurrence...
occs_userOccsoccs_userOccs Loads user provided occurrence records
part_partitionOccspart_partitionOccs Partition occurrence data
penvs_bgExtentpenvs_bgExtent Generate background extent
penvs_bgMaskpenvs_bgMask Mask environmental data
penvs_bgSamplepenvs_bgSample Sample background points
penvs_drawBgExtentpenvs_drawBgExtent: Draw background extent
penvs_userBgExtentpenvs_userBgExtent: user provided background extent
poccs_removeByIDpoccs_removeByID Remove occurrence by ID
poccs_selectOccspoccs_selectOccs Remove occurrences outside of polygon
poccs_thinOccspoocs_thinOccs Thin occurrences
polyZoompolyZoom
popUpContentpopUpContent
predictMaxnetpredictMaxnet
printVecAsisprintVecAsis
register_moduleRegister a Wallace module
remEnvsValsNAremEnvsValsNA
reverseLabelreverseLabel
run_wallaceRun _Wallace_ Application
smartProgresssmartProgress
spNamespName
spuriousSpurious package call to avoid note of functions outside R...
vis_bioclimPlotvis_bioclimPlot Visualize bivariate plot of BIOCLIM model
wallace-package_Wallace_: A modular platform for reproducible ecological...
write_csv_robustwrite_csv_robust
writeLogwriteLog
xfer_areaxfer_area Transfer model to a new area
xfer_drawxfer_draw Draw extent of transfer
xfer_messxfer_mess generate MESS map for transferred raster
xfer_timexfer_time Transfer model to a new time
xfer_userEnvsxfer_userEnvs Transfer model to user specified area and time
xfer_userExtentxfer_userExtent: user provided extent of transfer
zoom2Occszoom2Occs
wallace documentation built on Sept. 11, 2024, 9:16 p.m.