Files in wallace

A Modular Platform for Reproducible Modeling of Species Niches and Distributions

MD5

NEWS.md README.md

NAMESPACE

DESCRIPTION

R/penvs_bgMask.R R/vis_bioclimPlot.R R/penvs_bgExtent.R R/occs_queryDb.R R/occs_paleoDb.R R/penvs_bgSample.R R/model_bioclim.R R/poccs_removeByID.R R/penvs_drawBgExtent.R R/poccs_selectOccs.R R/xfer_area.R R/xfer_draw.R R/xfer_userEnvs.R R/run_wallace.R R/occs_userOccs.R R/envs_userEnvs.R R/envs_worldclim.R R/xfer_mess.R R/part_partitionOccs.R R/model_maxent.R R/xfer_userExtent.R R/envs_ecoClimate.R R/xfer_time.R R/penvs_userBgExtent.R R/espace_nicheOv.R R/wallace-package.R R/helper_functions.R R/custom_modules.R R/espace_pca.R R/poccs_thinOccs.R R/espace_occDens.R

inst/CITATION

inst/shiny/ui.R inst/shiny/global.R inst/shiny/server.R inst/shiny/helpers.R

inst/shiny/www/logo.png

inst/shiny/www/favicon.ico

inst/shiny/www/img/andrea.png

inst/shiny/www/img/UConn_Logo.tiff

inst/shiny/www/img/ufg.jpg

inst/shiny/www/img/uah.jpg

inst/shiny/www/img/bruno.png

inst/shiny/www/img/rob.jpeg

inst/shiny/www/img/UConn_Logo.jpg

inst/shiny/www/img/valentina.png

inst/shiny/www/img/jamie.jpg

inst/shiny/www/img/matt.png

inst/shiny/www/img/gonzalo.png

inst/shiny/www/img/dean.png

inst/shiny/www/img/brianM.jpeg

inst/shiny/www/img/cory.png

inst/shiny/www/img/mary.png

inst/shiny/www/img/saraV.jpeg

inst/shiny/www/img/bob.png

inst/shiny/www/img/aarhus.jpg

inst/shiny/www/img/bethany.jpg

inst/shiny/www/img/olivier.jpeg

inst/shiny/www/img/gc_logo.jpg

inst/shiny/www/img/sarah.png

inst/shiny/www/img/ccny_logo.jpg

inst/shiny/www/img/peteG.jpg

inst/shiny/www/img/hannahO.png

inst/shiny/www/js/shinyjs-funcs.js

inst/shiny/www/css/styles.css

inst/shiny/modules/penvs_drawBgExtent.yml

inst/shiny/modules/penvs_userBgExtent.yml

inst/shiny/modules/poccs_thinOccs.Rmd inst/shiny/modules/model_bioclim.Rmd inst/shiny/modules/envs_ecoclimate.Rmd inst/shiny/modules/penvs_drawBgExtent.md inst/shiny/modules/poccs_removeByID.md

inst/shiny/modules/espace_pca.yml

inst/shiny/modules/occs_paleoDb.md inst/shiny/modules/vis_maxentEvalPlot.md inst/shiny/modules/occs_queryDb.md inst/shiny/modules/vis_maxentEvalPlot.Rmd

inst/shiny/modules/part_spat.yml

inst/shiny/modules/rep_markdown.md

inst/shiny/modules/xfer_user.yml

inst/shiny/modules/xfer_mess.yml

inst/shiny/modules/part_nonSpat.R inst/shiny/modules/envs_worldclim.md inst/shiny/modules/rep_refPackages.md inst/shiny/modules/rep_refPackages.Rmd inst/shiny/modules/model_maxent.Rmd

inst/shiny/modules/poccs_thinOccs.yml

inst/shiny/modules/poccs_thinOccs.md inst/shiny/modules/vis_bioclimPlot.R inst/shiny/modules/penvs_bgExtent.R

inst/shiny/modules/envs_worldclim.yml

inst/shiny/modules/occs_queryDb.R inst/shiny/modules/xfer_user.R inst/shiny/modules/rep_markdown.R inst/shiny/modules/penvs_drawBgExtent.Rmd

inst/shiny/modules/xfer_time.yml

inst/shiny/modules/rep_refPackages.yml

inst/shiny/modules/penvs_userBgExtent.md inst/shiny/modules/occs_paleoDb.R inst/shiny/modules/part_nonSpat.md inst/shiny/modules/espace_pca.md inst/shiny/modules/model_bioclim.R inst/shiny/modules/rep_rmms.R inst/shiny/modules/poccs_removeByID.R

inst/shiny/modules/vis_maxentEvalPlot.yml

inst/shiny/modules/vis_mapPreds.R inst/shiny/modules/penvs_userBgExtent.Rmd inst/shiny/modules/xfer_mess.md

inst/shiny/modules/vis_responsePlot.yml

inst/shiny/modules/occs_paleoDb.yml

inst/shiny/modules/occs_userOccs.Rmd inst/shiny/modules/vis_mapPreds.md inst/shiny/modules/penvs_drawBgExtent.R inst/shiny/modules/poccs_selectOccs.R

inst/shiny/modules/xfer_area.yml

inst/shiny/modules/envs_userEnvs.yml

inst/shiny/modules/vis_bioclimPlot.yml

inst/shiny/modules/vis_bioclimPlot.Rmd inst/shiny/modules/xfer_area.R

inst/shiny/modules/rep_markdown.yml

inst/shiny/modules/rep_rmms.md inst/shiny/modules/part_nonSpat.Rmd inst/shiny/modules/model_maxent.md inst/shiny/modules/envs_userEnvs.md

inst/shiny/modules/poccs_removeByID.yml

inst/shiny/modules/envs_ecoclimate.yml

inst/shiny/modules/xfer_time.Rmd inst/shiny/modules/xfer_user.md inst/shiny/modules/occs_userOccs.R inst/shiny/modules/envs_userEnvs.R inst/shiny/modules/espace_pca.Rmd inst/shiny/modules/penvs_bgExtent.Rmd inst/shiny/modules/rep_markdown.Rmd inst/shiny/modules/envs_worldclim.R inst/shiny/modules/xfer_mess.R

inst/shiny/modules/vis_mapPreds.yml

inst/shiny/modules/occs_queryDb.yml

inst/shiny/modules/espace_nicheOv.yml

inst/shiny/modules/rep_rmms.yml

inst/shiny/modules/poccs_selectOccs.yml

inst/shiny/modules/poccs_selectOccs.md inst/shiny/modules/part_spat.Rmd inst/shiny/modules/espace_occDens.md inst/shiny/modules/xfer_mess.Rmd inst/shiny/modules/model_maxent.R inst/shiny/modules/part_spat.R inst/shiny/modules/espace_nicheOv.md inst/shiny/modules/rep_refPackages.R

inst/shiny/modules/espace_occDens.yml

inst/shiny/modules/envs_ecoclimate.R inst/shiny/modules/vis_responsePlot.R inst/shiny/modules/envs_worldclim.Rmd inst/shiny/modules/model_bioclim.md inst/shiny/modules/envs_userEnvs.Rmd

inst/shiny/modules/occs_userOccs.yml

inst/shiny/modules/xfer_area.Rmd inst/shiny/modules/espace_occDens.Rmd

inst/shiny/modules/model_maxent.yml

inst/shiny/modules/vis_bioclimPlot.md inst/shiny/modules/vis_maxentEvalPlot.R inst/shiny/modules/xfer_time.R inst/shiny/modules/vis_responsePlot.md inst/shiny/modules/vis_mapPreds.Rmd inst/shiny/modules/penvs_userBgExtent.R inst/shiny/modules/poccs_selectOccs.Rmd inst/shiny/modules/espace_nicheOv.R inst/shiny/modules/vis_responsePlot.Rmd

inst/shiny/modules/penvs_bgExtent.yml

inst/shiny/modules/penvs_bgExtent.md inst/shiny/modules/xfer_time.md inst/shiny/modules/espace_nicheOv.Rmd inst/shiny/modules/espace_pca.R inst/shiny/modules/occs_paleoDb.Rmd inst/shiny/modules/xfer_user.Rmd inst/shiny/modules/poccs_removeByID.Rmd

inst/shiny/modules/part_nonSpat.yml

inst/shiny/modules/occs_userOccs.md inst/shiny/modules/rep_rmms.Rmd inst/shiny/modules/envs_ecoclimate.md

inst/shiny/modules/model_bioclim.yml

inst/shiny/modules/poccs_thinOccs.R inst/shiny/modules/occs_queryDb.Rmd inst/shiny/modules/espace_occDens.R inst/shiny/modules/xfer_area.md inst/shiny/modules/part_spat.md inst/shiny/Rmd/gtext_rep.Rmd inst/shiny/Rmd/userReport_species.Rmd inst/shiny/Rmd/gtext_espace.Rmd inst/shiny/Rmd/gtext_part.Rmd inst/shiny/Rmd/userReport_multSpecies.Rmd inst/shiny/Rmd/gtext_poccs.Rmd inst/shiny/Rmd/userReport_intro.Rmd inst/shiny/Rmd/text_intro_tab.Rmd inst/shiny/Rmd/references.Rmd inst/shiny/Rmd/gtext_envs.Rmd inst/shiny/Rmd/gtext_vis.Rmd inst/shiny/Rmd/gtext_xfer.Rmd inst/shiny/Rmd/gtext_occs.Rmd inst/shiny/Rmd/text_team.Rmd inst/shiny/Rmd/text_about.Rmd inst/shiny/Rmd/gtext_model.Rmd inst/shiny/Rmd/text_loadsesh.Rmd inst/shiny/Rmd/text_how_to_use.Rmd inst/shiny/Rmd/gtext_penvs.Rmd inst/module_skeleton/skeleton.Rmd

inst/module_skeleton/skeleton.yml

inst/module_skeleton/skeleton.md inst/module_skeleton/skeleton.R

inst/extdata/Bassaricyon_alleni_bgPoints.csv

inst/extdata/Bassaricyon_alleni.csv

inst/extdata/model.RDS

inst/extdata/Bassaricyon_neblina_bgPoints.csv

inst/extdata/Marmosops_sp.csv

inst/extdata/Bassaricyon_neblina.csv

inst/extdata/shp/Bassaricyon_neblina.shx

inst/extdata/shp/Bassaricyon_neblina.dbf

inst/extdata/shp/Bassaricyon_neblina.shp

inst/extdata/wc/bio06.tif

inst/extdata/wc/bio14.tif

inst/extdata/wc/bio05.tif

inst/extdata/wc/bio13.tif

inst/extdata/wc/future/bio06.tif

inst/extdata/wc/future/bio14.tif

inst/extdata/wc/future/bio05.tif

inst/extdata/wc/future/bio13.tif

inst/extdata/wc/proj/no_projection.tif

tests/testthat.R

tests/README.txt

tests/testthat/test_xfer_userEnvs.R tests/testthat/test_occs_paleoDb.R tests/testthat/test_poccs_thinOccs.R tests/testthat/test_penvs_bgExtent.R tests/testthat/test_poccs_removeByID.R tests/testthat/test_espace_nicheOv.R tests/testthat/test_penvs_drawBgExtent.R tests/testthat/test_espace_pca.R tests/testthat/test_envs_userEnvs.R tests/testthat/test_penvs_bgMask.R tests/testthat/test_xfer_userExtent.R tests/testthat/test_penvs_bgSample.R tests/testthat/test_model_maxent.R tests/testthat/test_model_bioclim.R tests/testthat/test_poccs_selectOccs.R tests/testthat/test_envs_worldclim.R tests/testthat/test_xfer_area.R tests/testthat/test_penvs_userBgExtent.R tests/testthat/test_espace_occDens.R tests/testthat/test_part_partitionOccs.R tests/testthat/test_envs_ecoClimate.R tests/testthat/test_xfer_mess.R tests/testthat/test_occs_userOccs.R tests/testthat/test_xfer_time.R tests/testthat/test_vis_bioclimPlot.R tests/testthat/test_xfer_draw.R tests/testthat/test_occs_queryDb.R

tests/testthat/extdata/Marmosops_NA.csv

tests/testthat/extdata/Marmosops_wrongSP.csv

tests/testthat/extdata/cerdocyon-thous-2.csv

tests/testthat/extdata/Marmosops_sp.csv

tests/testthat/extdata/Marmosops_wrong.csv

tests/testthat/extdata/wc/proj/no_projection.tif

man/xfer_mess.Rd man/penvs_userBgExtent.Rd man/vis_bioclimPlot.Rd man/poccs_removeByID.Rd man/envs_ecoClimate.Rd man/penvs_drawBgExtent.Rd man/predictMaxnet.Rd man/polyZoom.Rd man/ecoClimate_select.Rd man/create_module.Rd man/penvs_bgExtent.Rd man/register_module.Rd man/writeLog.Rd man/poccs_selectOccs.Rd man/espace_occDens.Rd man/write_csv_robust.Rd man/xfer_userEnvs.Rd man/run_wallace.Rd man/xfer_draw.Rd man/clearAll.Rd man/occs_userOccs.Rd man/xfer_time.Rd man/mxNonzeroCoefs.Rd man/model_bioclim.Rd man/spurious.Rd man/penvs_bgSample.Rd man/hlSpp.Rd man/smartProgress.Rd man/poccs_thinOccs.Rd man/spName.Rd man/penvs_bgMask.Rd man/part_partitionOccs.Rd man/fmtSpN.Rd man/ecoClimate_getdata.Rd man/espace_nicheOv.Rd man/zoom2Occs.Rd man/xfer_area.Rd man/reverseLabel.Rd man/wallace-package.Rd man/envs_userEnvs.Rd man/popUpContent.Rd man/envs_worldclim.Rd man/printVecAsis.Rd man/espace_pca.Rd man/getRasterVals.Rd man/occs_queryDb.Rd man/model_maxent.Rd man/xfer_userExtent.Rd man/remEnvsValsNA.Rd

wallace documentation built on Sept. 26, 2023, 1:06 a.m.