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In wallace: A Modular Platform for Reproducible Modeling of Species Niches and Distributions

WORKFLOW

Wallace (v2.1.0) currently includes ten components, or steps of a possible workflow. Each component includes two or more modules, which are possible analyses for that step.

Components:

1. Obtain Occurrence Data
- Query Present Database - User-specified Occurrences

2. Obtain Environmental Data
- WorldClim - EcoClimate - User-specified Environmental Data

3. Process Occurrence Data
- Select Occurrences on Map
- Remove Occurrences by ID
- Spatial Thin

4. Process Environmental Data
- Select Study Region by Extent - Draw Study Region - User-specified Study Region

5. Characterize Environmental Space
- Environmental Ordination
- Occurrence Density Grid
- Niche Overlap

6. Partition Occurrence Data
- Non-spatial Partition
- Spatial Partition

7. Build and Evaluate Niche Model
- Maxent
- BIOCLIM

8. Visualize Model Results
- Map Prediction
- Maxent Evaluation Plots
- Plot Response Curves
- BIOCLIM Envelope Plots

9. Model Transfer
- Transfer to New Extent
- Transfer to New Time
- Transfer to User Environments - Calculate Environmental Similarity

10. Reproduce
- Download Session Code
- Download Metadata
- Download Package References

wallace documentation built on Sept. 26, 2023, 1:06 a.m.