In wallace: A Modular Platform for Reproducible Modeling of Species Niches and Distributions

```{asis, echo = {{vis_responsePlot_knit & vis_maxnet_knit}}, eval = {{vis_responsePlot_knit & vis_maxnet_knit}}, include = {{vis_responsePlot_knit & vis_maxnet_knit}}}

Visualize

Visualize response curves from "{{alg_rmd}}" model.

```r}, include = {{vis_responsePlot_knit & vis_maxnet_knit}}}
# Retrieve env variables
n <- mxNonzeroCoefs(model_{{spAbr}}@models[["{{curModel_rmd}}"]], "maxnet")

# Create response curves
for (i in n) {
maxnet::response.plot(
  model_{{spAbr}}@models[["{{curModel_rmd}}"]],
  v = i,
  type = "cloglog")
}

```{asis, echo = {{vis_responsePlot_knit & !vis_maxnet_knit}}, eval = {{vis_responsePlot_knit & !vis_maxnet_knit}}, include = {{vis_responsePlot_knit & !vis_maxnet_knit}}}

Visualize

Visualize response curves from "{{alg_rmd}}" model.

```r}, include = {{vis_responsePlot_knit & !vis_maxnet_knit}}}
# Retrieve env variables
n <- mxNonzeroCoefs(model_{{spAbr}}@models[["{{curModel_rmd}}"]], "maxent.jar")

# Create response curves
for (i in n) {
dismo::response(
  model_{{spAbr}}@models[["{{curModel_rmd}}"]],
  var = i)
}

wallace documentation built on Sept. 11, 2024, 9:16 p.m.