warbleR: Streamline Bioacoustic Analysis

Offers three overarching categories of functions to obtain bird vocalization recordings from the web, manage sound files, and facilitate (bio)acoustic analysis in R.

AuthorMarcelo Araya-Salas & Grace Smith Vidaurre
Date of publication2016-11-16 02:07:09
MaintainerMarcelo Araya-Salas <araya-salas@cornell.edu>
LicenseGPL (>= 2)
Version1.1.4

View on CRAN

Man pages

autodetec: Automatically detect vocalizations in sound files

checksels: Check selection data frames

checkwavs: Check .wav files

compare.methods: Assessing the performance of acoustic distance measurements

coor.graph: Coordinated singing graphs

coor.test: Randomization test for singing coordination

Cryp.soui: Acoustic recording of _Crypturellus soui_ (Little Tinamou).

dfDTW: Acoustic dissimilarity using dynamic time warping on dominant...

dfts: Extract the dominant frequency values as a time series

ffDTW: Acoustic dissimilarity using dynamic time warping on...

ffts: Extract the fundamental frequency values as a time series

filtersels: Subset selection data frames based on manually filtered image...

imp.raven: Import Raven selections

imp.syrinx: Import Syrinx selections

lspec: Create long spectrograms of whole sound files

lspec2pdf: 'lspec2pdf' combines lspec images in .jpeg format to a single...

manualoc: Interactive view of spectrograms

manualoc.df: Data frame of manualoc() selections.

mp32wav: Convert .mp3 files to .wav

Phae.long1: Acoustic recording #1 of _Phaethornis longirostris_

Phae.long2: Acoustic recording #2 of _Phaethornis longirostris_

Phae.long3: Acoustic recording #3 of _Phaethornis longirostris_

Phae.long4: Acoustic recording #1 of _Phaethornis longirostris_

querxc: Access Xeno-Canto recordings and metadata

selection.files: Selections files from Raven and Syrinx.

seltailor: Interactive view of spectrograms to tailor start and end of...

sig2noise: Measure signal-to-noise ratio

sim.coor.sing: Simulated coordinated singing events.

snrspecs: Spectrograms with background noise margins

specan: Measure acoustic parameters in batches of sound files

specreator: Spectrograms of selected signals

trackfreqs: Spectrograms with frequency measurements

warbleR: warbleR: A package to streamline bioacoustic analysis

wavdur: Measure the duration of sound files

xcmaps: Maps of Xeno-Canto recordings by species

xcorr: Spectrogram cross-correlation

xcorr.graph: Pairwise plots of spectrogram cross-correlation scores

Files in this package

warbleR
warbleR/inst
warbleR/inst/CITATION
warbleR/inst/doc
warbleR/inst/doc/warbleR_workflow.html
warbleR/inst/doc/warbleR_workflow.R
warbleR/inst/doc/warbleR_workflow.Rmd
warbleR/NAMESPACE
warbleR/NEWS
warbleR/data
warbleR/data/Phae.long4.rda
warbleR/data/manualoc.df.rda
warbleR/data/selection.files.rda
warbleR/data/sim.coor.sing.rda
warbleR/data/Phae.long2.rda
warbleR/data/Cryp.soui.rda
warbleR/data/Phae.long3.rda
warbleR/data/Phae.long1.rda
warbleR/R
warbleR/R/checkwavs.R warbleR/R/lspec2pdf.R warbleR/R/imp.raven.R warbleR/R/ffts.R warbleR/R/Phae.long3-data.R warbleR/R/sim.coor.sing-data.R warbleR/R/dfDTW.R warbleR/R/selection.files-data.R warbleR/R/manualoc.df-data.R warbleR/R/imp.syrinx.R warbleR/R/Phae.long4-data.R warbleR/R/xcorr.R warbleR/R/autodetec.R warbleR/R/snrspecs.R warbleR/R/xcmaps.R warbleR/R/compare.methods.R warbleR/R/wavdur.R warbleR/R/manualoc.R warbleR/R/checksels.R warbleR/R/dfts.R warbleR/R/coor.test.R warbleR/R/Phae.long2-data.R warbleR/R/querxc.R warbleR/R/specan.R warbleR/R/sig2noise.R warbleR/R/mp32wav.R warbleR/R/ffDTW.R warbleR/R/Phae.long1-data.R warbleR/R/trackfreqs.R warbleR/R/seltailor.R warbleR/R/Cryp.soui-data.R warbleR/R/coor.graph.R warbleR/R/specreator.R warbleR/R/xcorr.graph.R warbleR/R/lspec.R warbleR/R/filtersels.R warbleR/R/zzz.R warbleR/R/warbleR-package.R
warbleR/vignettes
warbleR/vignettes/Logo_Warble-azul_small_margin.png
warbleR/vignettes/Phaethornis-longirostris-154161.wav-139-trackfreqs.jpeg
warbleR/vignettes/Phae.snr.csv
warbleR/vignettes/Phaethornis-longirostris-154072.wav-104-.jpeg
warbleR/vignettes/workflow2.png
warbleR/vignettes/Phaethornis-longirostris-154072-p1.jpg
warbleR/vignettes/154161-autodetec.th15.jpg
warbleR/vignettes/Phaethornis-longirostris-154072.wav-8-snr2.jpeg
warbleR/vignettes/Phaethornis-longirostris-154072.wav-8-snr.jpeg
warbleR/vignettes/manualoc.jpg
warbleR/vignettes/acoustic_parameters.csv
warbleR/vignettes/warbleR_workflow.Rmd
warbleR/vignettes/song_types_spectros.jpg
warbleR/vignettes/154161-autodetec.th10.jpg
warbleR/README.md
warbleR/MD5
warbleR/build
warbleR/build/vignette.rds
warbleR/DESCRIPTION
warbleR/man
warbleR/man/coor.test.Rd warbleR/man/filtersels.Rd warbleR/man/xcorr.Rd warbleR/man/Phae.long2.Rd warbleR/man/selection.files.Rd warbleR/man/Phae.long1.Rd warbleR/man/warbleR.Rd warbleR/man/Cryp.soui.Rd warbleR/man/coor.graph.Rd warbleR/man/imp.syrinx.Rd warbleR/man/trackfreqs.Rd warbleR/man/specreator.Rd warbleR/man/querxc.Rd warbleR/man/Phae.long4.Rd warbleR/man/autodetec.Rd warbleR/man/seltailor.Rd warbleR/man/xcmaps.Rd warbleR/man/specan.Rd warbleR/man/lspec.Rd warbleR/man/lspec2pdf.Rd warbleR/man/ffDTW.Rd warbleR/man/sig2noise.Rd warbleR/man/manualoc.df.Rd warbleR/man/sim.coor.sing.Rd warbleR/man/imp.raven.Rd warbleR/man/xcorr.graph.Rd warbleR/man/ffts.Rd warbleR/man/wavdur.Rd warbleR/man/dfDTW.Rd warbleR/man/checksels.Rd warbleR/man/dfts.Rd warbleR/man/mp32wav.Rd warbleR/man/Phae.long3.Rd warbleR/man/manualoc.Rd warbleR/man/checkwavs.Rd warbleR/man/compare.methods.Rd warbleR/man/snrspecs.Rd

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

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