warbleR: Streamline Bioacoustic Analysis

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Offers three overarching categories of functions to obtain bird vocalization recordings from the web, manage sound files, and facilitate (bio)acoustic analysis in R.

Author
Marcelo Araya-Salas & Grace Smith Vidaurre
Date of publication
2016-11-16 02:07:09
Maintainer
Marcelo Araya-Salas <araya-salas@cornell.edu>
License
GPL (>= 2)
Version
1.1.4

View on CRAN

Man pages

autodetec
Automatically detect vocalizations in sound files
checksels
Check selection data frames
checkwavs
Check .wav files
compare.methods
Assessing the performance of acoustic distance measurements
coor.graph
Coordinated singing graphs
coor.test
Randomization test for singing coordination
Cryp.soui
Acoustic recording of _Crypturellus soui_ (Little Tinamou).
dfDTW
Acoustic dissimilarity using dynamic time warping on dominant...
dfts
Extract the dominant frequency values as a time series
ffDTW
Acoustic dissimilarity using dynamic time warping on...
ffts
Extract the fundamental frequency values as a time series
filtersels
Subset selection data frames based on manually filtered image...
imp.raven
Import Raven selections
imp.syrinx
Import Syrinx selections
lspec
Create long spectrograms of whole sound files
lspec2pdf
'lspec2pdf' combines lspec images in .jpeg format to a single...
manualoc
Interactive view of spectrograms
manualoc.df
Data frame of manualoc() selections.
mp32wav
Convert .mp3 files to .wav
Phae.long1
Acoustic recording #1 of _Phaethornis longirostris_
Phae.long2
Acoustic recording #2 of _Phaethornis longirostris_
Phae.long3
Acoustic recording #3 of _Phaethornis longirostris_
Phae.long4
Acoustic recording #1 of _Phaethornis longirostris_
querxc
Access Xeno-Canto recordings and metadata
selection.files
Selections files from Raven and Syrinx.
seltailor
Interactive view of spectrograms to tailor start and end of...
sig2noise
Measure signal-to-noise ratio
sim.coor.sing
Simulated coordinated singing events.
snrspecs
Spectrograms with background noise margins
specan
Measure acoustic parameters in batches of sound files
specreator
Spectrograms of selected signals
trackfreqs
Spectrograms with frequency measurements
warbleR
warbleR: A package to streamline bioacoustic analysis
wavdur
Measure the duration of sound files
xcmaps
Maps of Xeno-Canto recordings by species
xcorr
Spectrogram cross-correlation
xcorr.graph
Pairwise plots of spectrogram cross-correlation scores

Files in this package

warbleR
warbleR/inst
warbleR/inst/CITATION
warbleR/inst/doc
warbleR/inst/doc/warbleR_workflow.html
warbleR/inst/doc/warbleR_workflow.R
warbleR/inst/doc/warbleR_workflow.Rmd
warbleR/NAMESPACE
warbleR/NEWS
warbleR/data
warbleR/data/Phae.long4.rda
warbleR/data/manualoc.df.rda
warbleR/data/selection.files.rda
warbleR/data/sim.coor.sing.rda
warbleR/data/Phae.long2.rda
warbleR/data/Cryp.soui.rda
warbleR/data/Phae.long3.rda
warbleR/data/Phae.long1.rda
warbleR/R
warbleR/R/checkwavs.R
warbleR/R/lspec2pdf.R
warbleR/R/imp.raven.R
warbleR/R/ffts.R
warbleR/R/Phae.long3-data.R
warbleR/R/sim.coor.sing-data.R
warbleR/R/dfDTW.R
warbleR/R/selection.files-data.R
warbleR/R/manualoc.df-data.R
warbleR/R/imp.syrinx.R
warbleR/R/Phae.long4-data.R
warbleR/R/xcorr.R
warbleR/R/autodetec.R
warbleR/R/snrspecs.R
warbleR/R/xcmaps.R
warbleR/R/compare.methods.R
warbleR/R/wavdur.R
warbleR/R/manualoc.R
warbleR/R/checksels.R
warbleR/R/dfts.R
warbleR/R/coor.test.R
warbleR/R/Phae.long2-data.R
warbleR/R/querxc.R
warbleR/R/specan.R
warbleR/R/sig2noise.R
warbleR/R/mp32wav.R
warbleR/R/ffDTW.R
warbleR/R/Phae.long1-data.R
warbleR/R/trackfreqs.R
warbleR/R/seltailor.R
warbleR/R/Cryp.soui-data.R
warbleR/R/coor.graph.R
warbleR/R/specreator.R
warbleR/R/xcorr.graph.R
warbleR/R/lspec.R
warbleR/R/filtersels.R
warbleR/R/zzz.R
warbleR/R/warbleR-package.R
warbleR/vignettes
warbleR/vignettes/Logo_Warble-azul_small_margin.png
warbleR/vignettes/Phaethornis-longirostris-154161.wav-139-trackfreqs.jpeg
warbleR/vignettes/Phae.snr.csv
warbleR/vignettes/Phaethornis-longirostris-154072.wav-104-.jpeg
warbleR/vignettes/workflow2.png
warbleR/vignettes/Phaethornis-longirostris-154072-p1.jpg
warbleR/vignettes/154161-autodetec.th15.jpg
warbleR/vignettes/Phaethornis-longirostris-154072.wav-8-snr2.jpeg
warbleR/vignettes/Phaethornis-longirostris-154072.wav-8-snr.jpeg
warbleR/vignettes/manualoc.jpg
warbleR/vignettes/acoustic_parameters.csv
warbleR/vignettes/warbleR_workflow.Rmd
warbleR/vignettes/song_types_spectros.jpg
warbleR/vignettes/154161-autodetec.th10.jpg
warbleR/README.md
warbleR/MD5
warbleR/build
warbleR/build/vignette.rds
warbleR/DESCRIPTION
warbleR/man
warbleR/man/coor.test.Rd
warbleR/man/filtersels.Rd
warbleR/man/xcorr.Rd
warbleR/man/Phae.long2.Rd
warbleR/man/selection.files.Rd
warbleR/man/Phae.long1.Rd
warbleR/man/warbleR.Rd
warbleR/man/Cryp.soui.Rd
warbleR/man/coor.graph.Rd
warbleR/man/imp.syrinx.Rd
warbleR/man/trackfreqs.Rd
warbleR/man/specreator.Rd
warbleR/man/querxc.Rd
warbleR/man/Phae.long4.Rd
warbleR/man/autodetec.Rd
warbleR/man/seltailor.Rd
warbleR/man/xcmaps.Rd
warbleR/man/specan.Rd
warbleR/man/lspec.Rd
warbleR/man/lspec2pdf.Rd
warbleR/man/ffDTW.Rd
warbleR/man/sig2noise.Rd
warbleR/man/manualoc.df.Rd
warbleR/man/sim.coor.sing.Rd
warbleR/man/imp.raven.Rd
warbleR/man/xcorr.graph.Rd
warbleR/man/ffts.Rd
warbleR/man/wavdur.Rd
warbleR/man/dfDTW.Rd
warbleR/man/checksels.Rd
warbleR/man/dfts.Rd
warbleR/man/mp32wav.Rd
warbleR/man/Phae.long3.Rd
warbleR/man/manualoc.Rd
warbleR/man/checkwavs.Rd
warbleR/man/compare.methods.Rd
warbleR/man/snrspecs.Rd