wgsea: Wilcoxon based gene set enrichment analysis

Non parametric alternative to Kolmogorov-Smirnov based standard GSEA testing.

Author
Chris Wallace [aut, cre], Olly Burren [ctb]
Date of publication
2013-09-25 14:29:43
Maintainer
Chris Wallace <chris.wallace@cimr.cam.ac.uk>
License
GPL
Version
1.8

View on CRAN

Man pages

genperms
Generate permutations of a phenotype vector
pairtest
Generate p values for each SNP for case-control comparisons.
varplot
Plot theoretical and estimated variances of Wstar
wgsea-package
Gene set enrichment analysis using Wilcoxon rank tests
wilcoxon
Wilcoxon test statistic, with optional weights.
Z.value
Calculate a Z score from a Wilcoxon statistic and a set of...

Files in this package

wgsea
wgsea/inst
wgsea/inst/tests
wgsea/inst/tests/test_wilcoxon.R
wgsea/inst/tests/test_Z.R
wgsea/inst/tests/test_pairtest.R
wgsea/inst/tests/test_genperms.R
wgsea/inst/doc
wgsea/inst/doc/wgsea.R
wgsea/inst/doc/wgsea.pdf
wgsea/inst/doc/wgsea.Rnw
wgsea/tests
wgsea/tests/test-all.R
wgsea/NAMESPACE
wgsea/R
wgsea/R/pairtest.R
wgsea/R/plotting.R
wgsea/R/wgsea-package.R
wgsea/R/scoretest.R
wgsea/R/genperms.R
wgsea/R/Z.value.R
wgsea/R/wilcoxon.R
wgsea/vignettes
wgsea/vignettes/wgsea.bib
wgsea/vignettes/Wstar-var.pdf
wgsea/vignettes/wgsea.Rnw
wgsea/MD5
wgsea/build
wgsea/build/vignette.rds
wgsea/DESCRIPTION
wgsea/ChangeLog
wgsea/man
wgsea/man/wilcoxon.Rd
wgsea/man/wgsea-package.Rd
wgsea/man/pairtest.Rd
wgsea/man/varplot.Rd
wgsea/man/genperms.Rd
wgsea/man/Z.value.Rd